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    DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [ Sus scrofa (pig) ]

    Gene ID: 397385, updated on 17-Aug-2024

    Summary

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    Official Symbol
    DDOSTprovided by VGNC
    Official Full Name
    dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunitprovided by VGNC
    Primary source
    VGNC:VGNC:87211
    See related
    Ensembl:ENSSSCG00000003505
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    OST48
    Expression
    Ubiquitous expression in ovary (RPKM 96.7), liver (RPKM 91.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See DDOST in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (78885268..78895720, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (73128945..73139406, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene cytidine deaminase Neighboring gene PTEN induced kinase 1 Neighboring gene SH2 domain containing 5 Neighboring gene heterochromatin protein 1 binding protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. The oligosaccharyltransferase complex from pig liver: cDNA cloning, expression and functional characterisation. Hardt B, et al. Glycoconj J, 2000 Nov. PMID 11443278
    2. Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. Wintero AK, et al. Mamm Genome, 1996 Jul. PMID 8672129
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation via asparagine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of oligosaccharyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit
    Names
    DDOST 48 kDa subunit
    Oligosaccharyl transferase 48 kDa subunit
    oligosaccharyltransferase OST48
    NP_999353.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214188.1 → NP_999353.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit precursor

      See identical proteins and their annotated locations for NP_999353.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ293581
      UniProtKB/Swiss-Prot
      Q29381, Q9GL02
      UniProtKB/TrEMBL
      A0A4X1W6H2, A0A8D0IRH0
      Related
      ENSSSCP00000043061.1, ENSSSCT00000046162.1
      Conserved Domains (1) summary
      pfam03345
      Location:31 → 438
      DDOST_48kD; Oligosaccharyltransferase 48 kDa subunit beta

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      78885268..78895720 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q29381.2 GenPept UniProtKB/Swiss-Prot:Q29381

    Gene LinkOut

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