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    Dalrd3 DALR anticodon binding domain containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363146, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Dalrd3provided by RGD
    Official Full Name
    DALR anticodon binding domain containing 3provided by RGD
    Primary source
    RGD:1359206
    See related
    EnsemblRapid:ENSRNOG00000020159 AllianceGenome:RGD:1359206
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable tRNA binding activity. Predicted to be involved in tRNA C3-cytosine methylation. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 86. Orthologous to human DALRD3 (DALR anticodon binding domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 94.9), Brain (RPKM 93.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Dalrd3 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (118142009..118147082)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109264100..109268560)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117355943..117358819)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene glutamine-rich 1 Neighboring gene inosine monophosphate dehydrogenase 2 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 3 Neighboring gene microRNA 3555 Neighboring gene microRNA 191 Neighboring gene microRNA 425 Neighboring gene WD repeat domain 6 Neighboring gene prolyl 4-hydroxylase, transmembrane Neighboring gene ariadne RBR E3 ubiquitin protein ligase 2 Neighboring gene uncharacterized LOC120094262

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables arginine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables tRNA binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables tRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in arginyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA C3-cytosine methylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in tRNA C3-cytosine methylation ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    DALR anticodon-binding domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014214.1 → NP_001014236.1  DALR anticodon-binding domain-containing protein 3

      See identical proteins and their annotated locations for NP_001014236.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082046
      UniProtKB/Swiss-Prot
      Q641Y9
      UniProtKB/TrEMBL
      A0A8I5ZVT7, A6I370
      Related
      ENSRNOP00000082746.1, ENSRNOT00000119775.2
      Conserved Domains (1) summary
      smart00836
      Location:399 → 538
      DALR_1; DALR anticodon binding domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      118142009..118147082
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039081800.2 → XP_038937728.1  DALR anticodon-binding domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZVT7
      Conserved Domains (1) summary
      smart00836
      Location:346 → 485
      DALR_1; DALR anticodon binding domain

    RNA

    1. XR_010053997.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q641Y9.1 GenPept UniProtKB/Swiss-Prot:Q641Y9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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