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    Tmem39b transmembrane protein 39b [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362608, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Tmem39bprovided by RGD
    Official Full Name
    transmembrane protein 39bprovided by RGD
    Primary source
    RGD:1359450
    See related
    EnsemblRapid:ENSRNOG00000023746 AllianceGenome:RGD:1359450
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in membrane. Orthologous to human TMEM39B (transmembrane protein 39B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 60.4), Thymus (RPKM 56.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem39b in Genome Data Viewer
    Location:
    5q36
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (147308616..147330895, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (142024271..142046607, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (147889871..147910057, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene taxilin alpha Neighboring gene karyopherin subunit alpha 6 Neighboring gene KH RNA binding domain containing, signal transduction associated 1 Neighboring gene transfer RNA valine (anticodon AAC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 39B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014192.1 → NP_001014214.1  transmembrane protein 39B

      See identical proteins and their annotated locations for NP_001014214.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082025
      UniProtKB/Swiss-Prot
      Q66H44
      UniProtKB/TrEMBL
      A0A8I5ZXA8, A6ISL7
      Related
      ENSRNOP00000032295.7, ENSRNOT00000032558.8
      Conserved Domains (1) summary
      pfam10271
      Location:48 → 478
      Tmp39; Putative transmembrane protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      147308616..147330895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110363.2 → XP_038966291.1  transmembrane protein 39B isoform X3

      Conserved Domains (1) summary
      pfam10271
      Location:1 → 351
      Tmp39; Putative transmembrane protein

    2. XM_039110361.2 → XP_038966289.1  transmembrane protein 39B isoform X1

      UniProtKB/TrEMBL
      F1LRC8
      Conserved Domains (1) summary
      pfam10271
      Location:10 → 378
      Tmp39; Putative transmembrane protein

    3. XM_063288026.1 → XP_063144096.1  transmembrane protein 39B isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66H44.1 GenPept UniProtKB/Swiss-Prot:Q66H44

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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