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    Odc1 Ornithine decarboxylase 1 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35766, updated on 18-Sep-2024

    Summary

    Official Symbol
    Odc1provided by FlyBase
    Official Full Name
    Ornithine decarboxylase 1provided by FlyBase
    Primary source
    FLYBASE:FBgn0013307
    Locus tag
    Dmel_CG8721
    See related
    AllianceGenome:FB:FBgn0013307
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG8721; Dmel\CG8721; dodc1; Odc-1
    Summary
    Predicted to enable ornithine decarboxylase activity. Predicted to be involved in putrescine biosynthetic process from ornithine. Predicted to be active in cytoplasm. Is expressed in embryonic/larval fat body. Human ortholog(s) of this gene implicated in esophagus squamous cell carcinoma; hepatocellular carcinoma; and liver cirrhosis. Orthologous to several human genes including ODC1 (ornithine decarboxylase 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See Odc1 in Genome Data Viewer
    Location:
    44A2-44A2; 2-58 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (8004824..8006672)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (3892329..3894177)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Hairy/E(spl)-related with YRPW motif Neighboring gene uncharacterized protein Neighboring gene Ornithine decarboxylase 2 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ornithine decarboxylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ornithine decarboxylase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in polyamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in putrescine biosynthetic process from ornithine IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    ornithine decarboxylase 1
    Names
    CG8721-PA
    Odc1-PA
    ornithine decarboxylase
    ornithine decarboxylase-1
    NP_477052.2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      8004824..8006672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_057704.5NP_477052.2  ornithine decarboxylase 1 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_477052.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P40807, Q9V352
      Related
      FBpp0087939
      Conserved Domains (2) summary
      cd00622
      Location:30391
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase
      COG0019
      Location:16391
      LysA; Diaminopimelate decarboxylase [Amino acid transport and metabolism]