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    Tmem106c transmembrane protein 106C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315286, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Tmem106cprovided by RGD
    Official Full Name
    transmembrane protein 106Cprovided by RGD
    Primary source
    RGD:1311532
    See related
    EnsemblRapid:ENSRNOG00000053269 AllianceGenome:RGD:1311532
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311532
    Summary
    Predicted to be located in endoplasmic reticulum membrane. Orthologous to human TMEM106C (transmembrane protein 106C). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 59.0), Kidney (RPKM 57.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem106c in Genome Data Viewer
    Location:
    7q36
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (130967526..130973205)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (129088468..129094128)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (139444929..139450592)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108351548 Neighboring gene uncharacterized LOC103692974 Neighboring gene vitamin D receptor Neighboring gene collagen type II alpha 1 chain Neighboring gene SUMO specific peptidase 1 Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC105614

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 106C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008358.1 → NP_001008359.1  transmembrane protein 106C

      See identical proteins and their annotated locations for NP_001008359.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086606
      UniProtKB/Swiss-Prot
      Q5RJK0
      UniProtKB/TrEMBL
      A0A8I5ZPT4, A6KC50
      Conserved Domains (1) summary
      pfam07092
      Location:18 → 246
      DUF1356; Protein of unknown function (DUF1356)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      130967526..130973205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242326.5 → XP_006242388.1  transmembrane protein 106C isoform X1

      See identical proteins and their annotated locations for XP_006242388.1

      UniProtKB/Swiss-Prot
      Q5RJK0
      UniProtKB/TrEMBL
      A0A8I5ZPT4, A6KC50
      Related
      ENSRNOP00000071424.1, ENSRNOT00000090079.3
      Conserved Domains (1) summary
      pfam07092
      Location:18 → 246
      DUF1356; Protein of unknown function (DUF1356)

    2. XM_017594888.3 → XP_017450377.1  transmembrane protein 106C isoform X1

      UniProtKB/Swiss-Prot
      Q5RJK0
      UniProtKB/TrEMBL
      A0A8I5ZPT4, A6KC50
      Conserved Domains (1) summary
      pfam07092
      Location:18 → 246
      DUF1356; Protein of unknown function (DUF1356)

    RNA

    1. XR_005486650.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5RJK0.1 GenPept UniProtKB/Swiss-Prot:Q5RJK0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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