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    Zc2hc1c zinc finger, C2HC-type containing 1C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 314321, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Zc2hc1cprovided by RGD
    Official Full Name
    zinc finger, C2HC-type containing 1Cprovided by RGD
    Primary source
    RGD:1307122
    See related
    EnsemblRapid:ENSRNOG00000027115 AllianceGenome:RGD:1307122
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam164c; RGD1307122
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human ZC2HC1C (zinc finger C2HC-type containing 1C). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 119.8), Kidney (RPKM 48.5) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zc2hc1c in Genome Data Viewer
    Location:
    6q31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (110663682..110672606)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (104932631..104941555)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (109110534..109119458)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene mutL homolog 3 Neighboring gene acylphosphatase 1 Neighboring gene NIMA-related kinase 9 Neighboring gene uncharacterized LOC102549675 Neighboring gene transmembrane p24 trafficking protein 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger C2HC domain-containing protein 1C
    Names
    family with sequence similarity 164, member C
    protein FAM164C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014079.1 → NP_001014101.1  zinc finger C2HC domain-containing protein 1C

      See identical proteins and their annotated locations for NP_001014101.1

      Status: PROVISIONAL

      Source sequence(s)
      BC078967
      UniProtKB/Swiss-Prot
      Q6AYP4
      Related
      ENSRNOP00000009156.5, ENSRNOT00000009156.8
      Conserved Domains (2) summary
      pfam03938
      Location:188 → 266
      OmpH; Outer membrane protein (OmpH-like)
      pfam13913
      Location:489 → 511
      zf-C2HC_2; zinc-finger of a C2HC-type

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      110663682..110672606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AYP4.1 GenPept UniProtKB/Swiss-Prot:Q6AYP4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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