Clybl citramalyl-CoA lyase [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Clyblprovided by RGD
Official Full Name: citramalyl-CoA lyaseprovided by RGD
Primary source: RGD:1304615
See related: EnsemblRapid:ENSRNOG00000014075 AllianceGenome:RGD:1304615
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable (S)-citramalyl-CoA lyase activity; magnesium ion binding activity; and malate synthase activity. Predicted to be involved in positive regulation of cobalamin metabolic process and protein homotrimerization. Predicted to be located in mitochondrion. Orthologous to human CLYBL (citramalyl-CoA lyase). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Heart (RPKM 191.6), Kidney (RPKM 184.8) and 8 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 15q25

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	15	NC_086033.1 (105690283..105912347)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	15	NC_051350.1 (99283644..99505697)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	15	NC_005114.4 (108608203..108838222)

Chromosome 15 - NC_086033.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

BE102058 (e-PCR)
- UniSTS:244056

D15Rat157 (e-PCR)
- UniSTS:226717

d15rat28 (e-PCR)
- UniSTS:121063

RH143957 (e-PCR)
- UniSTS:233203

AI256068 (e-PCR)
- UniSTS:180724

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables (S)-citramalyl-CoA lyase activity	IBA Inferred from Biological aspect of Ancestor more info
enables (S)-citramalyl-CoA lyase activity	IEA Inferred from Electronic Annotation more info
enables (S)-citramalyl-CoA lyase activity	ISO Inferred from Sequence Orthology more info
enables (S)-citramalyl-CoA lyase activity	ISS Inferred from Sequence or Structural Similarity more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables magnesium ion binding	IEA Inferred from Electronic Annotation more info
enables magnesium ion binding	ISO Inferred from Sequence Orthology more info
enables magnesium ion binding	ISS Inferred from Sequence or Structural Similarity more info
enables malate synthase activity	IEA Inferred from Electronic Annotation more info
enables malate synthase activity	ISO Inferred from Sequence Orthology more info
enables malate synthase activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
involved_in positive regulation of cobalamin metabolic process	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of cobalamin metabolic process	ISO Inferred from Sequence Orthology more info
involved_in protein homotrimerization	IEA Inferred from Electronic Annotation more info
involved_in protein homotrimerization	ISO Inferred from Sequence Orthology more info
involved_in protein homotrimerization	ISS Inferred from Sequence or Structural Similarity more info
involved_in regulation of cobalamin metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of cobalamin metabolic process	ISO Inferred from Sequence Orthology more info
involved_in regulation of cobalamin metabolic process	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in mitochondrion	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: citramalyl-CoA lyase, mitochondrial

Names: (3S)-malyl-CoA thioesterase; beta-methylmalate synthase; citrate lyase beta like; citrate lyase subunit beta-like protein, mitochondrial; malate synthase

NP_001094155.1

EC 2.3.3.9

EC 3.1.2.30

EC 4.1.3.25

XP_063130431.1

EC 2.3.3.9

EC 3.1.2.30

EC 4.1.3.25

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.