ccl27a chemokine (C-C motif) ligand 27a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ccl27aprovided by ZNC
Official Full Name: chemokine (C-C motif) ligand 27aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-000208-28
See related: Ensembl:ENSDARG00000058570 AllianceGenome:ZFIN:ZDB-GENE-000208-28
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ccl1; wu:fa96a04
Summary: Predicted to enable chemokine activity. Predicted to act upstream of or within chemotaxis and immune response. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Orthologous to several human genes including CCL27 (C-C motif chemokine ligand 27). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 8

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (1170015..1183948)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (1104272..1118205)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa96a04.x1 (e-PCR)
- UniSTS:189708

fa96a04.x1 (e-PCR)
- UniSTS:189709

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chemokine activity	IBA Inferred from Biological aspect of Ancestor more info
enables chemokine activity	IEA Inferred from Electronic Annotation more info
enables cytokine activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chemotaxis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within immune response	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in extracellular space	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: C-C motif chemokine 27a

Names: CC chemokine 1; Dr18_WGA1436_1_236332; Dr8_WGA606_1_66363

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.