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    Gpalpp1 GPALPP motifs containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298712, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gpalpp1provided by RGD
    Official Full Name
    GPALPP motifs containing 1provided by RGD
    Primary source
    RGD:1307254
    See related
    EnsemblRapid:ENSRNOG00000001037 AllianceGenome:RGD:1307254
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307254
    Summary
    Orthologous to human GPALPP1 (GPALPP motifs containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 151.7), Kidney (RPKM 118.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Gpalpp1 in Genome Data Viewer
    Location:
    15q11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (57818490..57838723, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (51411883..51429435, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (58153501..58171022, complement)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482153 Neighboring gene uncharacterized LOC120097044 Neighboring gene uncharacterized LOC103690313 Neighboring gene RAN, member RAS oncogene family, pseudogene 6 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene high mobility group AT-hook 1, pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC114554

    General protein information

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    Preferred Names
    GPALPP motifs-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024875.1 → NP_001020046.1  GPALPP motifs-containing protein 1

      See identical proteins and their annotated locations for NP_001020046.1

      Status: PROVISIONAL

      Source sequence(s)
      BC097485
      UniProtKB/Swiss-Prot
      Q4V893
      UniProtKB/TrEMBL
      A6HTU7
      Related
      ENSRNOP00000001371.4, ENSRNOT00000001371.8
      Conserved Domains (1) summary
      pfam12572
      Location:204 → 340
      DUF3752; Protein of unknown function (DUF3752)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      57818490..57838723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039093222.2 → XP_038949150.1  GPALPP motifs-containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam12572
      Location:47 → 183
      DUF3752; Protein of unknown function (DUF3752)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4V893.1 GenPept UniProtKB/Swiss-Prot:Q4V893

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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