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    Atosb atos homolog B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298201, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Atosbprovided by RGD
    Official Full Name
    atos homolog Bprovided by RGD
    Primary source
    RGD:1311249
    See related
    EnsemblRapid:ENSRNOG00000009323 AllianceGenome:RGD:1311249
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam214b; RGD1311249
    Summary
    Predicted to be located in nucleus. Orthologous to human ATOSB (atos homolog B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Spleen (RPKM 99.5), Testes (RPKM 76.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Atosb in Genome Data Viewer
    Location:
    5q22
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (62056654..62070338, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (57260839..57274524, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (58477894..58484900, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene FA complementation group G Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class O Neighboring gene stomatin like 2 Neighboring gene unc-13 homolog B Neighboring gene ribosomal protein L39, pseudogene 2 Neighboring gene thymosin beta 4, X-linked like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Na CH, et al. J Proteome Res, 2012 Sep 7. PMID 22871113, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    atos homolog protein B
    Names
    family with sequence similarity 214, member B
    protein FAM214B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013931.2 → NP_001013953.1  atos homolog protein B

      See identical proteins and their annotated locations for NP_001013953.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A0A8L2Q5T7, A6IJ03
      Related
      ENSRNOP00000012386.5, ENSRNOT00000012386.7
      Conserved Domains (2) summary
      pfam13889
      Location:480 → 536
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:348 → 405
      DUF4210; Domain of unknown function (DUF4210)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      62056654..62070338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039109526.1 → XP_038965454.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A0A8L2Q5T7, A6IJ03
      Conserved Domains (2) summary
      pfam13889
      Location:480 → 536
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:348 → 405
      DUF4210; Domain of unknown function (DUF4210)

    2. XM_063287373.1 → XP_063143443.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A6IJ03

    3. XM_039109527.2 → XP_038965455.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A0A8L2Q5T7, A6IJ03
      Conserved Domains (2) summary
      pfam13889
      Location:480 → 536
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:348 → 405
      DUF4210; Domain of unknown function (DUF4210)

    4. XM_063287375.1 → XP_063143445.1  atos homolog protein B isoform X2

    5. XM_063287371.1 → XP_063143441.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A6IJ03

    6. XM_063287374.1 → XP_063143444.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A6IJ03

    7. XM_039109528.2 → XP_038965456.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A0A8L2Q5T7, A6IJ03
      Conserved Domains (2) summary
      pfam13889
      Location:480 → 536
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:348 → 405
      DUF4210; Domain of unknown function (DUF4210)

    8. XM_039109530.1 → XP_038965458.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A0A8L2Q5T7, A6IJ03
      Conserved Domains (2) summary
      pfam13889
      Location:480 → 536
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:348 → 405
      DUF4210; Domain of unknown function (DUF4210)

    9. XM_039109531.1 → XP_038965459.1  atos homolog protein B isoform X2

      UniProtKB/TrEMBL
      A0A8L2Q5T7
      Conserved Domains (2) summary
      pfam13889
      Location:479 → 535
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:347 → 404
      DUF4210; Domain of unknown function (DUF4210)

    10. XM_039109529.1 → XP_038965457.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A0A8L2Q5T7, A6IJ03
      Conserved Domains (2) summary
      pfam13889
      Location:480 → 536
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:348 → 405
      DUF4210; Domain of unknown function (DUF4210)

    11. XM_063287372.1 → XP_063143442.1  atos homolog protein B isoform X1

      UniProtKB/Swiss-Prot
      Q5PQM8
      UniProtKB/TrEMBL
      A6IJ03
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5PQM8.1 GenPept UniProtKB/Swiss-Prot:Q5PQM8

    Gene LinkOut

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