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    Fshb follicle stimulating hormone subunit beta [ Rattus norvegicus (Norway rat) ]

    Gene ID: 25447, updated on 2-Nov-2024

    Summary

    Official Symbol
    Fshbprovided by RGD
    Official Full Name
    follicle stimulating hormone subunit betaprovided by RGD
    Primary source
    RGD:2630
    See related
    EnsemblRapid:ENSRNOG00000004898 AllianceGenome:RGD:2630
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    FSH-B; FSH-beta
    Summary
    Predicted to enable follicle-stimulating hormone activity. Predicted to be involved in several processes, including follicle-stimulating hormone signaling pathway; positive regulation of steroid biosynthetic process; and transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within several processes, including gonad development; positive regulation of bone resorption; and regulation of osteoclast differentiation. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in cytoplasm and extracellular space. Human ortholog(s) of this gene implicated in amenorrhea and hypogonadotropic hypogonadism 24 without anosmia. Orthologous to human FSHB (follicle stimulating hormone subunit beta). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 6.3), Testes (RPKM 3.0) and 1 other tissue See more
    Orthologs
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    Genomic context

    See Fshb in Genome Data Viewer
    Location:
    3q33
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (114003262..114007072, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (93548560..93552370, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (98088321..98092131, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene metallophosphoesterase domain containing 2 Neighboring gene histidine triad nucleotide binding protein 1, pseudogene 4 Neighboring gene ADP-ribosylation factor like GTPase 14 effector protein Neighboring gene uncharacterized LOC134486417 Neighboring gene potassium voltage-gated channel subfamily A member 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables follicle-stimulating hormone activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables follicle-stimulating hormone activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables follicle-stimulating hormone activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables follicle-stimulating hormone activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in G protein-coupled receptor signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within Sertoli cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in follicle-stimulating hormone signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within follicle-stimulating hormone signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in follicle-stimulating hormone signaling pathway TAS
    Traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within ovarian follicle development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of bone resorption ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of steroid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of osteoclast differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of signaling receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within spermatogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in transforming growth factor beta receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of follicle-stimulating hormone complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of follicle-stimulating hormone complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of follicle-stimulating hormone complex TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    follitropin subunit beta
    Names
    follicle - stimulating hormone subunit beta
    follicle stimulating hormone beta subunit
    follicle stimulating hormone, beta polypeptide
    follitropin beta chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007597.2NP_001007598.1  follitropin subunit beta precursor

      See identical proteins and their annotated locations for NP_001007598.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      P18427
      UniProtKB/TrEMBL
      A0A0F7RQH5, A6HNZ5, B5DEM1
      Related
      ENSRNOP00000006512.4, ENSRNOT00000006512.7
      Conserved Domains (1) summary
      smart00068
      Location:18124
      GHB; Glycoprotein hormone beta chain homologues

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      114003262..114007072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)