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    ptr1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542537, updated on 22-Aug-2024

    Summary

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    Official Symbol
    ptr1
    Primary source
    PomBase:SPAC19D5.04
    Locus tag
    SPOM_SPAC19D5.04
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (5208640..5218739)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase Pyp2 Neighboring gene ncRNA Neighboring gene protein Emc10 Neighboring gene ncRNA Neighboring gene terminal uridylyltransferase Cid1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene U3 snoRNP-associated protein Imp3 Neighboring gene DNA replication factor C complex subunit Ctf8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mudi, a web tool for identifying mutations by bioinformatics analysis of whole-genome sequence. Iida N, et al. Genes Cells, 2014 Jun. PMID 24766403
    2. The fission yeast ptr1+ gene involved in nuclear mRNA export encodes a putative ubiquitin ligase. Andoh T, et al. Biochem Biophys Res Commun, 2004 May 14. PMID 15094387
    3. RNA interference regulates the cell cycle checkpoint through the RNA export factor, Ptr1, in fission yeast. Iida T, et al. Biochem Biophys Res Commun, 2012 Oct 12. PMID 22989756
    4. Characterization of Thi9, a novel thiamine (Vitamin B1) transporter from Schizosaccharomyces pombe. Vogl C, et al. J Biol Chem, 2008 Mar 21. PMID 18201975
    5. A context-dependent and disordered ubiquitin-binding motif. Dreier JE, et al. Cell Mol Life Sci, 2022 Aug 16. PMID 35974206, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rRNA processing ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      5208640..5218739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020331.3 → NP_594902.1  E3 ubiquitin-protein ligase [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594902.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13834
      Conserved Domains (6) summary
      COG5021
      Location:2314 → 3227
      HUL4; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      cd00078
      Location:2870 → 3225
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
      pfam06012
      Location:96 → 367
      DUF908; Domain of Unknown Function (DUF908)
      pfam06025
      Location:436 → 735
      DUF913; Domain of Unknown Function (DUF913)
      pfam14377
      Location:2267 → 2347
      DUF4414; Domain of unknown function (DUF4414)
      cl01319
      Location:1930 → 2018
      HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    Nucleotide Protein
    Heading Accession and Version

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