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    Cacna1c calcium voltage-gated channel subunit alpha1 C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 24239, updated on 14-Nov-2024

    Summary

    Official Symbol
    Cacna1cprovided by RGD
    Official Full Name
    calcium voltage-gated channel subunit alpha1 Cprovided by RGD
    Primary source
    RGD:2245
    See related
    EnsemblRapid:ENSRNOG00000007090 AllianceGenome:RGD:2245
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RATIVS302
    Summary
    Enables several functions, including high voltage-gated calcium channel activity; protein phosphatase 2A binding activity; and transmembrane transporter binding activity. Involved in several processes, including calcium ion transport; nervous system development; and positive regulation of transport. Located in several cellular components, including T-tubule; Z disc; and postsynaptic density. Part of L-type voltage-gated calcium channel complex. Is active in glutamatergic synapse; postsynaptic membrane; and presynaptic membrane. Biomarker of alcohol dependence. Human ortholog(s) of this gene implicated in Brugada syndrome 3; Timothy syndrome; long QT syndrome 8; and neurodevelopmental disorder with hypotonia, language delay, and skeletal defects with or without seizures. Orthologous to human CACNA1C (calcium voltage-gated channel subunit alpha1 C). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 239.6), Uterus (RPKM 92.8) and 5 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cacna1c in Genome Data Viewer
    Location:
    4q42
    Exon count:
    54
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (153431169..154051932, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (151764138..152379454, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (150635808..151270790, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene ankyrin repeat domain containing 26 Neighboring gene zinc finger protein 9 Neighboring gene uncharacterized LOC134486629 Neighboring gene uncharacterized LOC134486627 Neighboring gene uncharacterized LOC134486628 Neighboring gene decapping mRNA 1B Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 4 Neighboring gene uncharacterized LOC134486630 Neighboring gene leucine-rich repeats and transmembrane domains 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables alpha-actinin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables alpha-actinin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables calmodulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables high voltage-gated calcium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables high voltage-gated calcium channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables high voltage-gated calcium channel activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein domain specific binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein phosphatase 2A binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables translation initiation factor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transmembrane transporter binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables voltage-gated calcium channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables voltage-gated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables voltage-gated calcium channel activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables voltage-gated calcium channel activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables voltage-gated calcium channel activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables voltage-gated calcium channel activity involved in AV node cell action potential ISO
    Inferred from Sequence Orthology
    more info
     
    enables voltage-gated calcium channel activity involved in AV node cell action potential ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    contributes_to voltage-gated calcium channel activity involved in cardiac muscle cell action potential ISO
    Inferred from Sequence Orthology
    more info
     
    enables voltage-gated calcium channel activity involved in cardiac muscle cell action potential ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to voltage-gated calcium channel activity involved in cardiac muscle cell action potential ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables voltage-gated calcium channel activity involved in cardiac muscle cell action potential ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within adult walking behavior ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in axon development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in calcium ion import IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in calcium ion import across plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within calcium ion import across plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in calcium ion transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in calcium ion transmembrane transport via high voltage-gated calcium channel IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in calcium ion transmembrane transport via high voltage-gated calcium channel IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in calcium ion transmembrane transport via high voltage-gated calcium channel ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in calcium ion transmembrane transport via high voltage-gated calcium channel ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in calcium ion transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within calcium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in calcium ion transport into cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within calcium-ion regulated exocytosis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in camera-type eye development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cardiac conduction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cardiac conduction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cardiac muscle cell action potential involved in contraction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cardiac muscle cell action potential involved in contraction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within cell communication involved in cardiac conduction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to amyloid-beta IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in cerebral cortex development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of_or_within chemical synaptic transmission ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in corpus callosum development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in embryonic forelimb morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within establishment of localization in cell ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in exocytosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within glucose homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within growth hormone secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in heart development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in immune system development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within insulin secretion ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within intracellular calcium ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in membrane depolarization during AV node cell action potential ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in membrane depolarization during AV node cell action potential ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in membrane depolarization during atrial cardiac muscle cell action potential ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in membrane depolarization during atrial cardiac muscle cell action potential ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in membrane depolarization during cardiac muscle cell action potential ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in membrane depolarization during cardiac muscle cell action potential ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in optic nerve development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in positive regulation of adenylate cyclase activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of adenylate cyclase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of calcium ion transmembrane transport via high voltage-gated calcium channel IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of cytosolic calcium ion concentration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of insulin secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of membrane depolarization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of blood pressure ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of heart rate by cardiac conduction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of heart rate by cardiac conduction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within regulation of organ growth ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of postsynaptic membrane potential IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of vasoconstriction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of ventricular cardiac muscle cell action potential ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of ventricular cardiac muscle cell action potential ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in response to alcohol IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to nutrient levels IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in response to organic cyclic compound IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within smooth muscle contraction ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within smooth muscle contraction involved in micturition ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within visual learning ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of L-type voltage-gated calcium channel complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of L-type voltage-gated calcium channel complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of L-type voltage-gated calcium channel complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in T-tubule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in T-tubule IEA
    Inferred from Electronic Annotation
    more info
     
    located_in T-tubule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in T-tubule TAS
    Traceable Author Statement
    more info
    PubMed 
    located_in Z disc IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Z disc ISO
    Inferred from Sequence Orthology
    more info
     
    located_in axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in axon cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in basal pole of outer hair cell ISO
    Inferred from Sequence Orthology
    more info
     
    located_in basolateral plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    part_of caveolar macromolecular signaling complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
     
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendritic shaft ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in glutamatergic synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuron projection terminus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    NOT located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perikaryon IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in postsynaptic density IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in postsynaptic density ISO
    Inferred from Sequence Orthology
    more info
     
    located_in postsynaptic density membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in postsynaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT located_in presynaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in presynaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in sarcolemma IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of voltage-gated calcium channel complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of voltage-gated calcium channel complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of voltage-gated calcium channel complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of voltage-gated calcium channel complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of voltage-gated calcium channel complex TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    voltage-dependent L-type calcium channel subunit alpha-1C
    Names
    L-type calcium channel alpha-1 subunit
    RBC
    brain class C
    calcium channel, voltage-dependent, L type, alpha 1C subunit
    calcium channel, voltage-dependent, alpha 1C subunit
    voltage-gated calcium channel subunit alpha Cav1.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_012517.2NP_036649.2  voltage-dependent L-type calcium channel subunit alpha-1C

      Status: VALIDATED

      Source sequence(s)
      AF394939, DQ538522, JAXUCZ010000004, M67516
      UniProtKB/TrEMBL
      A0A8I6ANR4
      Related
      ENSRNOP00000094898.2, ENSRNOT00000106776.2
      Conserved Domains (5) summary
      pfam00520
      Location:12661517
      Ion_trans; Ion transport protein
      pfam08763
      Location:15901661
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16885
      Location:16842117
      CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
      pfam16905
      Location:15251588
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
      cl01503
      Location:232321
      TrbL; TrbL/VirB6 plasmid conjugal transfer protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      153431169..154051932 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063285506.1XP_063141576.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X25

    2. XM_063285499.1XP_063141569.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X18

    3. XM_063285512.1XP_063141582.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X31

    4. XM_063285503.1XP_063141573.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X22

    5. XM_063285508.1XP_063141578.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X27

    6. XM_063285500.1XP_063141570.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X19

    7. XM_063285504.1XP_063141574.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X23

    8. XM_063285491.1XP_063141561.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X10

    9. XM_063285492.1XP_063141562.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X11

    10. XM_063285487.1XP_063141557.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X6

    11. XM_063285495.1XP_063141565.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X14

      Related
      ENSRNOP00000048790.7, ENSRNOT00000052017.8
    12. XM_063285483.1XP_063141553.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X2

    13. XM_063285505.1XP_063141575.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X24

    14. XM_063285498.1XP_063141568.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X17

      UniProtKB/TrEMBL
      F1M5G9, Q8VHT3
    15. XM_063285501.1XP_063141571.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X20

      UniProtKB/TrEMBL
      Q8VHT2
    16. XM_063285507.1XP_063141577.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X26

    17. XM_063285497.1XP_063141567.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X16

      UniProtKB/TrEMBL
      F1LMN0, Q71QJ6
    18. XM_063285502.1XP_063141572.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X21

    19. XM_063285493.1XP_063141563.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X12

    20. XM_063285496.1XP_063141566.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X15

    21. XM_063285489.1XP_063141559.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X8

    22. XM_063285490.1XP_063141560.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X9

    23. XM_063285488.1XP_063141558.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X7

    24. XM_063285485.1XP_063141555.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X4

    25. XM_063285486.1XP_063141556.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X5

    26. XM_063285482.1XP_063141552.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X1

    27. XM_063285484.1XP_063141554.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X3

    28. XM_063285494.1XP_063141564.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X13

    29. XM_063285509.1XP_063141579.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X28

    30. XM_063285510.1XP_063141580.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X29

    31. XM_063285511.1XP_063141581.1  voltage-dependent L-type calcium channel subunit alpha-1C isoform X30