U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    D930020B18Rik RIKEN cDNA D930020B18 gene [ Mus musculus (house mouse) ]

    Gene ID: 216393, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    D930020B18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D930020B18 geneprovided by MGI
    Primary source
    MGI:MGI:2442001
    See related
    Ensembl:ENSMUSG00000047642 AllianceGenome:MGI:2442001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500017I17Rik
    Summary
    Is expressed in epididymis; olfactory epithelium; and vomeronasal organ. Orthologous to human C12orf56 (chromosome 12 open reading frame 56). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See D930020B18Rik in Genome Data Viewer
    Location:
    10 D2; 10 69.89 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (121477006..121530239)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (121641101..121694334)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene TANK-binding kinase 1 Neighboring gene STARR-positive B cell enhancer ABC_E1129 Neighboring gene STARR-positive B cell enhancer ABC_E9355 Neighboring gene STARR-seq mESC enhancer starr_28102 Neighboring gene exportin, tRNA (nuclear export receptor for tRNAs) Neighboring gene predicted gene, 35816 Neighboring gene STARR-seq mESC enhancer starr_28105 Neighboring gene predicted gene, 35865 Neighboring gene KICSTOR subunit 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Thirteen Ovary-Enriched Genes Are Individually Not Essential for Female Fertility in Mice. Pham AH, et al. Cells, 2024 May 8. PMID 38786026, Free PMC Article
    2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2)  1 citation
    • Targeted (2) 

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C12orf56 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177335.4 → NP_796309.3  uncharacterized protein C12orf56 homolog

      Status: VALIDATED

      Source sequence(s)
      AC124992
      Consensus CDS
      CCDS36074.2
      UniProtKB/TrEMBL
      D3Z3G0
      Related
      ENSMUSP00000113963.2, ENSMUST00000120642.9
      Conserved Domains (1) summary
      pfam15087
      Location:12 → 616
      DUF4551; Protein of unknown function (DUF4551)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      121477006..121530239
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513551.3 → XP_006513614.1  uncharacterized protein C12orf56 homolog isoform X1

      Conserved Domains (1) summary
      pfam15087
      Location:12 → 618
      DUF4551; Protein of unknown function (DUF4551)

    2. XM_036155759.1 → XP_036011652.1  uncharacterized protein C12orf56 homolog isoform X2

      Conserved Domains (1) summary
      pfam15087
      Location:12 → 616
      DUF4551; Protein of unknown function (DUF4551)

    3. XM_006513552.3 → XP_006513615.1  uncharacterized protein C12orf56 homolog isoform X3

      Conserved Domains (1) summary
      pfam15087
      Location:12 → 612
      DUF4551; Protein of unknown function (DUF4551)

    4. XM_006513555.3 → XP_006513618.1  uncharacterized protein C12orf56 homolog isoform X4

      Conserved Domains (1) summary
      pfam15087
      Location:12 → 319
      DUF4551; Protein of unknown function (DUF4551)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CCC3.1 GenPept UniProtKB/Swiss-Prot:Q8CCC3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools