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    LOC18611650 transcription factor TGA1 [ Theobroma cacao (cacao) ]

    Gene ID: 18611650, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18611650
    Gene description
    transcription factor TGA1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18611650 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 1 NC_030850.1 (5858070..5866213)

    Chromosome 1 - NC_030850.1Genomic Context describing neighboring genes Neighboring gene UBP1-associated proteins 1A Neighboring gene retrotransposon-like protein 1 Neighboring gene alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At2g22070 Neighboring gene gamma-glutamyltranspeptidase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030850.1 Chromosome 1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGA1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030850.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      5858070..5866213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007048015.2 → XP_007048077.1  transcription factor TGA1

      See identical proteins and their annotated locations for XP_007048077.1

      UniProtKB/TrEMBL
      A0A061DI74, A0A061DJU4
      Conserved Domains (3) summary
      cd14686
      Location:79 → 130
      bZIP; coiled coil [structural motif]
      pfam14144
      Location:164 → 240
      DOG1; Seed dormancy control
      cl21462
      Location:78 → 130
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_018127601.1 → XP_017983090.1  transcription factor TGA1

      UniProtKB/TrEMBL
      A0A061DI74, A0A061DJU4
    Nucleotide Protein
    Heading Accession and Version

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