U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC18596775 auxin response factor 3 [ Theobroma cacao (cacao) ]

    Gene ID: 18596775, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC18596775
    Gene description
    auxin response factor 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC18596775 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 6 NC_030855.1 (23442064..23448270)

    Chromosome 6 - NC_030855.1Genomic Context describing neighboring genes Neighboring gene trans-resveratrol di-O-methyltransferase Neighboring gene uncharacterized LOC18596774 Neighboring gene uncharacterized LOC108662603 Neighboring gene MLO-like protein 6 Neighboring gene glutaredoxin-C9

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_030855.1 Chromosome 6 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    auxin response factor 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030855.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      23442064..23448270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018123400.1 → XP_017978889.1  auxin response factor 3 isoform X4

      UniProtKB/TrEMBL
      A0A061GFF5

    2. XM_018123399.1 → XP_017978888.1  auxin response factor 3 isoform X1

      UniProtKB/TrEMBL
      A0A061GFF5

    3. XM_007025458.2 → XP_007025520.2  auxin response factor 3 isoform X3

      UniProtKB/TrEMBL
      A0A061GG84

    4. XM_007025459.2 → XP_007025521.2  auxin response factor 3 isoform X2

      UniProtKB/TrEMBL
      A0A061GFF5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases