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    LOC18596029 nuclear poly(A) polymerase 4 [ Theobroma cacao (cacao) ]

    Gene ID: 18596029, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC18596029
    Gene description
    nuclear poly(A) polymerase 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18596029 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 6 NC_030855.1 (18397678..18404266, complement)

    Chromosome 6 - NC_030855.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein IAA26 Neighboring gene hexokinase-2 Neighboring gene protein IQ-DOMAIN 14 Neighboring gene transfer RNA isoleucine (anticodon AAU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030855.1 Chromosome 6 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A) RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear poly(A) polymerase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030855.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      18397678..18404266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007024262.2 → XP_007024324.2  nuclear poly(A) polymerase 4 isoform X2

      UniProtKB/TrEMBL
      A0A061GBH8

    2. XM_007024261.2 → XP_007024323.2  nuclear poly(A) polymerase 4 isoform X1

      UniProtKB/TrEMBL
      A0A061GAM8

    3. XM_018123409.1 → XP_017978898.1  nuclear poly(A) polymerase 4 isoform X3

      UniProtKB/TrEMBL
      A0A061GAM8
    Nucleotide Protein
    Heading Accession and Version

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