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    LOC18591677 probable serine/threonine-protein kinase At4g35230 [ Theobroma cacao (cacao) ]

    Gene ID: 18591677, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18591677
    Gene description
    probable serine/threonine-protein kinase At4g35230
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18591677 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 8 NC_030857.1 (2548661..2553128, complement)

    Chromosome 8 - NC_030857.1Genomic Context describing neighboring genes Neighboring gene lysine-specific histone demethylase 1 homolog 1 Neighboring gene ATP-dependent zinc metalloprotease FTSH, chloroplastic Neighboring gene uncharacterized LOC18591678 Neighboring gene uncharacterized LOC18591679

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030857.1 Chromosome 8 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brassinosteroid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine-protein kinase At4g35230

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030857.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      2548661..2553128 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007017927.2 → XP_007017989.1  probable serine/threonine-protein kinase At4g35230

      See identical proteins and their annotated locations for XP_007017989.1

      UniProtKB/TrEMBL
      A0A061FL71
      Conserved Domains (4) summary
      sd00006
      Location:412 → 436
      TPR; TPR repeat [structural motif]
      pfam00069
      Location:91 → 329
      Pkinase; Protein kinase domain
      pfam13414
      Location:407 → 469
      TPR_11; TPR repeat
      cl21453
      Location:92 → 335
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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