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    LOC18586384 chorismate synthase, chloroplastic [ Theobroma cacao (cacao) ]

    Gene ID: 18586384, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18586384
    Gene description
    chorismate synthase, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Theobroma cacao
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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    Genomic context

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    See LOC18586384 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 10 NC_030859.1 (3899459..3904829)

    Chromosome 10 - NC_030859.1Genomic Context describing neighboring genes Neighboring gene putative serine/threonine-protein kinase Neighboring gene aminodeoxychorismate synthase, chloroplastic Neighboring gene patatin-like protein 6 Neighboring gene tyrosine-specific transport protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_030859.1 Chromosome 10 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chorismate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aromatic amino acid family biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chorismate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chorismate synthase, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Criollo_cocoa_genome_V2 Primary Assembly

    Genomic

    1. NC_030859.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

      Range
      3899459..3904829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018129589.1 → XP_017985078.1  chorismate synthase, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A061FP19

    2. XM_018129588.1 → XP_017985077.1  chorismate synthase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A061FP19
    Nucleotide Protein
    Heading Accession and Version

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