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    Hpgd hydroxyprostaglandin dehydrogenase 15 (NAD) [ Mus musculus (house mouse) ]

    Gene ID: 15446, updated on 2-Nov-2024

    Summary

    Official Symbol
    Hpgdprovided by MGI
    Official Full Name
    hydroxyprostaglandin dehydrogenase 15 (NAD)provided by MGI
    Primary source
    MGI:MGI:108085
    See related
    Ensembl:ENSMUSG00000031613 AllianceGenome:MGI:108085
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    15-PGDH
    Summary
    Enables 15-hydroxyprostaglandin dehydrogenase (NAD+) activity. Involved in ductus arteriosus closure. Located in basolateral plasma membrane. Is expressed in several structures, including alimentary system; choroid plexus; genitourinary system; humerus cartilage condensation; and nose. Human ortholog(s) of this gene implicated in colon carcinoma and primary hypertrophic osteoarthropathy. Orthologous to human HPGD (15-hydroxyprostaglandin dehydrogenase). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in lung adult (RPKM 76.0), bladder adult (RPKM 50.8) and 17 other tissues See more
    Orthologs
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    Genomic context

    See Hpgd in Genome Data Viewer
    Location:
    8 B2; 8 29.7 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (56747587..56774081)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (56294552..56321046)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene a disintegrin and metallopeptidase domain 29 Neighboring gene glycine receptor, alpha 3 subunit Neighboring gene ribosomal protein S7 pseudogene Neighboring gene STARR-seq mESC enhancer starr_21512 Neighboring gene STARR-seq mESC enhancer starr_21513 Neighboring gene STARR-seq mESC enhancer starr_21514 Neighboring gene STARR-seq mESC enhancer starr_21515 Neighboring gene STARR-seq mESC enhancer starr_21516 Neighboring gene STARR-seq mESC enhancer starr_21517 Neighboring gene RIKEN cDNA 4930518J21 gene Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (4)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC14001

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables 15-hydroxyprostaglandin dehydrogenase (NAD+) activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables 15-hydroxyprostaglandin dehydrogenase (NAD+) activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables 15-hydroxyprostaglandin dehydrogenase (NAD+) activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables 15-hydroxyprostaglandin dehydrogenase (NAD+) activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables NAD binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables NAD binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables NAD+ binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables NAD+ binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor ISO
    Inferred from Sequence Orthology
    more info
     
    enables prostaglandin E receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables prostaglandin E receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in ductus arteriosus closure IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in female pregnancy IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in female pregnancy ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in female pregnancy ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in kidney development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of cell cycle ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in ovulation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in parturition ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in parturition ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of vascular associated smooth muscle cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of vascular associated smooth muscle cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in prostaglandin metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in prostaglandin metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in prostaglandin metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of prostaglandin catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of prostaglandin catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in response to estradiol IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to ethanol IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to ethanol ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to lipopolysaccharide IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in thrombin-activated receptor signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in transforming growth factor beta receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in transforming growth factor beta receptor signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in basolateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    15-hydroxyprostaglandin dehydrogenase [NAD(+)]
    Names
    15-hydroxyprostaglandin dehydrogenase
    PGDH
    eicosanoid/docosanoid dehydrogenase
    prostaglandin dehydrogenase 1
    NP_032304.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008278.2NP_032304.2  15-hydroxyprostaglandin dehydrogenase [NAD(+)]

      See identical proteins and their annotated locations for NP_032304.2

      Status: VALIDATED

      Source sequence(s)
      AK146038, BB870447, BY581851
      Consensus CDS
      CCDS40341.1
      UniProtKB/Swiss-Prot
      Q61106, Q8VCC1
      Related
      ENSMUSP00000034026.9, ENSMUST00000034026.10
      Conserved Domains (1) summary
      cd05323
      Location:6254
      ADH_SDR_c_like; insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      56747587..56774081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)