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    NEK10 NIMA related kinase 10 [ Homo sapiens (human) ]

    Gene ID: 152110, updated on 28-Oct-2024

    Summary

    Official Symbol
    NEK10provided by HGNC
    Official Full Name
    NIMA related kinase 10provided by HGNC
    Primary source
    HGNC:HGNC:18592
    See related
    Ensembl:ENSG00000163491 MIM:618726; AllianceGenome:HGNC:18592
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CILD44
    Summary
    Enables protein kinase activity. Involved in several processes, including mucociliary clearance; positive regulation of protein phosphorylation; and regulation of ERK1 and ERK2 cascade. Part of protein kinase complex. Implicated in primary ciliary dyskinesia 44. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Biased expression in testis (RPKM 2.8), brain (RPKM 0.3) and 6 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See NEK10 in Genome Data Viewer
    Location:
    3p24.1
    Exon count:
    47
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (27106484..27369383, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (27108644..27371532, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (27147975..27410874, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:26663597-26664112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:26665705-26666674 Neighboring gene LRRC3B antisense RNA 1 Neighboring gene uncharacterized LOC124909488 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:26727688-26727896 Neighboring gene leucine rich repeat containing 3B Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:26824284-26824877 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:26824878-26825470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19615 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:27083978-27084542 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:27085107-27085671 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:27084543-27085106 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:27141697-27142896 Neighboring gene NANOG hESC enhancer GRCh37_chr3:27147157-27147736 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14148 Neighboring gene MPRA-validated peak4579 silencer Neighboring gene MICOS10 pseudogene 3 Neighboring gene RNA, U6 small nuclear 342, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:27352339-27353538 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:27410132-27410632 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:27483819-27484320 Neighboring gene solute carrier family 4 member 7 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:27505552-27506411 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:27513115-27513615 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19616 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19617 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19618 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:27525149-27525925 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19619 Neighboring gene ribosomal protein S20 pseudogene 15 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Ciliary dyskinesia, primary, 44
    MedGen: C5394063 OMIM: 618781 GeneReviews: Not available
    Compare labs

    EBI GWAS Catalog

    Description
    A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ32685

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables histone H2AS1 kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    part_of protein kinase complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    serine/threonine-protein kinase Nek10
    Names
    NIMA (never in mitosis gene a)- related kinase 10
    never in mitosis A-related kinase 10
    nimA-related protein kinase 10
    NP_001026911.1
    NP_001291313.1
    NP_001381892.1
    NP_001381893.1
    NP_001381894.1
    NP_001381895.1
    NP_001381896.1
    NP_001381897.1
    NP_001381898.1
    NP_001381899.1
    NP_001381900.1
    NP_689747.3
    NP_955379.2
    XP_006713061.1
    XP_006713062.1
    XP_006713064.1
    XP_011531716.1
    XP_016861251.1
    XP_016861252.1
    XP_016861253.1
    XP_016861254.1
    XP_016861257.1
    XP_016861263.1
    XP_047303461.1
    XP_047303462.1
    XP_047303463.1
    XP_047303464.1
    XP_047303465.1
    XP_047303466.1
    XP_047303467.1
    XP_047303468.1
    XP_054201339.1
    XP_054201340.1
    XP_054201341.1
    XP_054201342.1
    XP_054201343.1
    XP_054201344.1
    XP_054201345.1
    XP_054201346.1
    XP_054201347.1
    XP_054201348.1
    XP_054201349.1
    XP_054201350.1
    XP_054201351.1
    XP_054201352.1
    XP_054201353.1
    XP_054201354.1
    XP_054201355.1
    XP_054201356.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031741.5NP_001026911.1  serine/threonine-protein kinase Nek10 isoform 1

      See identical proteins and their annotated locations for NP_001026911.1

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931
      Related
      ENSP00000373281.4, ENST00000383771.8
      Conserved Domains (1) summary
      cl21453
      Location:1097
      PKc_like; Protein Kinases, catalytic domain
    2. NM_001304384.3NP_001291313.1  serine/threonine-protein kinase Nek10 isoform 4

      See identical proteins and their annotated locations for NP_001291313.1

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931
      Consensus CDS
      CCDS77713.1
      Related
      ENSP00000295720.6, ENST00000295720.10
      Conserved Domains (1) summary
      cl21453
      Location:1097
      PKc_like; Protein Kinases, catalytic domain
    3. NM_001394963.1NP_001381892.1  serine/threonine-protein kinase Nek10 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    4. NM_001394964.1NP_001381893.1  serine/threonine-protein kinase Nek10 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:489756
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    5. NM_001394965.1NP_001381894.1  serine/threonine-protein kinase Nek10 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/TrEMBL
      A0A650C2C8, A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    6. NM_001394966.1NP_001381895.1  serine/threonine-protein kinase Nek10 isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      Consensus CDS
      CCDS93229.1
      UniProtKB/TrEMBL
      A0A650C2D3, A0A8I5KTB8
      Related
      ENSP00000509472.1, ENST00000691995.1
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    7. NM_001394967.1NP_001381896.1  serine/threonine-protein kinase Nek10 isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:489756
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    8. NM_001394968.1NP_001381897.1  serine/threonine-protein kinase Nek10 isoform 10

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cl21453
      Location:525746
      PKc_like; Protein Kinases, catalytic domain
    9. NM_001394969.1NP_001381898.1  serine/threonine-protein kinase Nek10 isoform 11

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cl21453
      Location:489689
      PKc_like; Protein Kinases, catalytic domain
    10. NM_001394970.1NP_001381899.1  serine/threonine-protein kinase Nek10 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
      UniProtKB/TrEMBL
      A0A650C2D3
      Related
      ENSP00000395849.2, ENST00000429845.6
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    11. NM_001394971.1NP_001381900.1  serine/threonine-protein kinase Nek10 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/TrEMBL
      A0A650C2C8, A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    12. NM_152534.6NP_689747.3  serine/threonine-protein kinase Nek10 isoform 2

      See identical proteins and their annotated locations for NP_689747.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the inferred longest transcript and encodes the longest isoform (2).
      Source sequence(s)
      AC093555, AC098931, AC099535
      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    13. NM_199347.4NP_955379.2  serine/threonine-protein kinase Nek10 isoform 3

      See identical proteins and their annotated locations for NP_955379.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks multiple 3' coding exons and contains an alternate 3' terminal exon, compared to variant 2, resulting in a different 3' coding region and 3' UTR. The encoded isoform (3) has a distinct C-terminus and is shorter than isoform 2.
      Source sequence(s)
      AK098832, AK123061, BX537852
      Consensus CDS
      CCDS46781.1
      UniProtKB/Swiss-Prot
      Q6ZWH5
      UniProtKB/TrEMBL
      Q8N774
      Related
      ENSP00000343847.5, ENST00000341435.9
      Conserved Domains (2) summary
      smart00220
      Location:519695
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:518697
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      27106484..27369383 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047447506.1XP_047303462.1  serine/threonine-protein kinase Nek10 isoform X6

    2. XM_047447508.1XP_047303464.1  serine/threonine-protein kinase Nek10 isoform X8

    3. XM_017005763.2XP_016861252.1  serine/threonine-protein kinase Nek10 isoform X1

      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    4. XM_047447507.1XP_047303463.1  serine/threonine-protein kinase Nek10 isoform X7

    5. XM_017005768.2XP_016861257.1  serine/threonine-protein kinase Nek10 isoform X4

      UniProtKB/TrEMBL
      A0A650C2D3
    6. XM_006713001.4XP_006713064.1  serine/threonine-protein kinase Nek10 isoform X5

      UniProtKB/TrEMBL
      A0A650C2D3, A0A8I5KTB8
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    7. XM_047447505.1XP_047303461.1  serine/threonine-protein kinase Nek10 isoform X5

      UniProtKB/TrEMBL
      A0A8I5KTB8
    8. XM_017005762.3XP_016861251.1  serine/threonine-protein kinase Nek10 isoform X1

      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    9. XM_017005764.2XP_016861253.1  serine/threonine-protein kinase Nek10 isoform X1

      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    10. XM_017005765.2XP_016861254.1  serine/threonine-protein kinase Nek10 isoform X1

      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (1) summary
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    11. XM_006712999.4XP_006713062.1  serine/threonine-protein kinase Nek10 isoform X3

      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (2) summary
      smart00220
      Location:519779
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    12. XM_006712998.3XP_006713061.1  serine/threonine-protein kinase Nek10 isoform X2

      UniProtKB/TrEMBL
      A0A650C2D3
      Conserved Domains (2) summary
      smart00220
      Location:519779
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd08528
      Location:518785
      STKc_Nek10; Catalytic domain of the Serine/Threonine Kinase, Never In Mitosis gene A (NIMA)-related kinase 10
    13. XM_047447509.1XP_047303465.1  serine/threonine-protein kinase Nek10 isoform X9

    14. XM_011533414.3XP_011531716.1  serine/threonine-protein kinase Nek10 isoform X12

      Conserved Domains (2) summary
      smart00220
      Location:519669
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:518672
      PKc_like; Protein Kinases, catalytic domain
    15. XM_047447512.1XP_047303468.1  serine/threonine-protein kinase Nek10 isoform X14

    16. XM_047447511.1XP_047303467.1  serine/threonine-protein kinase Nek10 isoform X13

    17. XM_047447510.1XP_047303466.1  serine/threonine-protein kinase Nek10 isoform X11

    18. XM_017005774.3XP_016861263.1  serine/threonine-protein kinase Nek10 isoform X10

      Conserved Domains (2) summary
      smart00220
      Location:519669
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl21453
      Location:518672
      PKc_like; Protein Kinases, catalytic domain

    RNA

    1. XR_001740034.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      27108644..27371532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054345373.1XP_054201348.1  serine/threonine-protein kinase Nek10 isoform X6

    2. XM_054345375.1XP_054201350.1  serine/threonine-protein kinase Nek10 isoform X8

    3. XM_054345364.1XP_054201339.1  serine/threonine-protein kinase Nek10 isoform X1

      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
    4. XM_054345374.1XP_054201349.1  serine/threonine-protein kinase Nek10 isoform X7

    5. XM_054345370.1XP_054201345.1  serine/threonine-protein kinase Nek10 isoform X4

    6. XM_054345372.1XP_054201347.1  serine/threonine-protein kinase Nek10 isoform X5

      UniProtKB/TrEMBL
      A0A8I5KTB8
    7. XM_054345371.1XP_054201346.1  serine/threonine-protein kinase Nek10 isoform X5

      UniProtKB/TrEMBL
      A0A8I5KTB8
    8. XM_054345366.1XP_054201341.1  serine/threonine-protein kinase Nek10 isoform X1

      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
    9. XM_054345367.1XP_054201342.1  serine/threonine-protein kinase Nek10 isoform X1

      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
    10. XM_054345365.1XP_054201340.1  serine/threonine-protein kinase Nek10 isoform X1

      UniProtKB/Swiss-Prot
      A8MWG1, B9ZVR0, Q45VJ4, Q6ZR11, Q6ZWH5, Q7Z671, Q86XB1, Q96MB3
    11. XM_054345369.1XP_054201344.1  serine/threonine-protein kinase Nek10 isoform X3

    12. XM_054345368.1XP_054201343.1  serine/threonine-protein kinase Nek10 isoform X2

    13. XM_054345376.1XP_054201351.1  serine/threonine-protein kinase Nek10 isoform X9

    14. XM_054345379.1XP_054201354.1  serine/threonine-protein kinase Nek10 isoform X12

    15. XM_054345381.1XP_054201356.1  serine/threonine-protein kinase Nek10 isoform X14

    16. XM_054345380.1XP_054201355.1  serine/threonine-protein kinase Nek10 isoform X13

    17. XM_054345378.1XP_054201353.1  serine/threonine-protein kinase Nek10 isoform X11

    18. XM_054345377.1XP_054201352.1  serine/threonine-protein kinase Nek10 isoform X10