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    dapF diaminopimelate epimerase [ Methanothermobacter thermautotrophicus str. Delta H ]

    Gene ID: 1471051, updated on 17-May-2023

    Summary

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    Gene symbol
    dapF
    Gene description
    diaminopimelate epimerase
    Locus tag
    MTH_RS06370
    Gene type
    protein coding
    Organism
    Methanothermobacter thermautotrophicus str. Delta H (strain: Delta H, synonym: Methanobacterium thermoautotrophicum str. deltaH, type-material: type strain of Methanobacterium thermautotrophicum)
    Lineage
    Archaea; Euryarchaeota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter
    Old locus tag
    MTH1334; MTH_1334
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    Genomic context

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    Location:
    clone: MTH
    Sequence:
    NC_000916.1 (1200942..1201811, complement)

    NC_000916.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene C39 family peptidase Neighboring gene diaminopimelate decarboxylase Neighboring gene NUDIX domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000916.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of Mycobacterium tuberculosis diaminopimelic acid epimerase: paired cysteine residues are crucial for racemization. Usha V, et al. FEMS Microbiol Lett, 2008 Mar. PMID 18269631
    2. Dimerization of bacterial diaminopimelate epimerase is essential for catalysis. Hor L, et al. J Biol Chem, 2013 Mar 29. PMID 23426375, Free PMC Article
    3. Chemical mechanism of Haemophilus influenzae diaminopimelate epimerase. Koo CW, et al. Biochemistry, 1999 Apr 6. PMID 10194362
    4. Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics. Smith DR, et al. J Bacteriol, 1997 Nov. PMID 9371463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    diaminopimelate epimerase
    WP_010876947.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000916.1 Reference assembly

      Range
      1200942..1201811 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_010876947.1 MULTISPECIES: diaminopimelate epimerase [Methanothermobacter]

      See identical proteins and their annotated locations for WP_010876947.1

      UniProtKB/TrEMBL
      A0A223Z2I6, A0A371NC62, A0A842LRS5, T2GL73
      Conserved Domains (1) summary
      PRK00450
      Location:3 → 285
      dapF; diaminopimelate epimerase; Provisional
    Nucleotide Protein
    Heading Accession and Version