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    Tenm2 teneurin transmembrane protein 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 117242, updated on 2-Nov-2024

    Summary

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    Symbol
    Tenm2provided by RGD
    Full Name
    teneurin transmembrane protein 2provided by RGD
    Primary source
    RGD:727907
    See related
    EnsemblRapid:ENSRNOG00000027341 AllianceGenome:RGD:727907
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Odz2; Lasso
    Summary
    Enables cell adhesion molecule binding activity and signaling receptor binding activity. Predicted to be involved in several processes, including negative regulation of transcription by RNA polymerase II; positive regulation of filopodium assembly; and retrograde trans-synaptic signaling by trans-synaptic protein complex. Located in dendritic spine and postsynaptic membrane. Is active in glutamatergic synapse. Is extrinsic component of postsynaptic membrane. Orthologous to human TENM2 (teneurin transmembrane protein 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 70.7), Adrenal (RPKM 8.4) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tenm2 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (20984710..22121001, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (20480662..21706415, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (20846091..21791771, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480662 Neighboring gene uncharacterized LOC108352202 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC120095252 Neighboring gene WW and C2 domain containing 1 Neighboring gene uncharacterized LOC108352204 Neighboring gene uncharacterized LOC134480776 Neighboring gene uncharacterized LOC134480777 Neighboring gene uncharacterized LOC120095249 Neighboring gene uncharacterized LOC120095253 Neighboring gene uncharacterized LOC120095250 Neighboring gene uncharacterized LOC108352072 Neighboring gene small nucleolar RNA SNORA72 Neighboring gene uncharacterized LOC134480663

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Neurestin: putative transmembrane molecule implicated in neuronal development. Otaki JM, et al. Dev Biol, 1999 Aug 1. PMID 10419693
    2. Latrophilin 1 and its endogenous ligand Lasso/teneurin-2 form a high-affinity transsynaptic receptor pair with signaling capabilities. Silva JP, et al. Proc Natl Acad Sci U S A, 2011 Jul 19. PMID 21724987, Free PMC Article
    3. All four members of the Ten-m/Odz family of transmembrane proteins form dimers. Feng K, et al. J Biol Chem, 2002 Jul 19. PMID 12000766
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Latrophilin 1 and its endogenous ligand Lasso/teneurin-2 form a high-affinity transsynaptic receptor pair with signaling capabilities.
      Title: Latrophilin 1 and its endogenous ligand Lasso/teneurin-2 form a high-affinity transsynaptic receptor pair with signaling capabilities.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cell adhesion molecule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables cell adhesion molecule binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cell adhesion molecule binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein heterodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables protein heterodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein homodimerization activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables signaling receptor binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables signaling receptor binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell-cell adhesion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in negative regulation of transcription by RNA polymerase II ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in neuron development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of filopodium assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in retrograde trans-synaptic signaling by trans-synaptic protein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in retrograde trans-synaptic signaling by trans-synaptic protein complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in PML body ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cell junction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cell-cell junction ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cell-cell junction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in dendrite ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in dendritic spine IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in extrinsic component of postsynaptic membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in extrinsic component of postsynaptic membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in filopodium ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in glutamatergic synapse IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in glutamatergic synapse IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in growth cone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in neuron projection IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in postsynaptic membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in synapse IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    teneurin-2
    Names
    neurestin
    odd Oz/ten-m homolog 2
    odz, odd Oz/ten-m homolog 2
    protein Odd Oz/ten-m homolog 2
    ten-2
    ten-m2
    tenascin-M2
    teneurin-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020088.1 → NP_064473.1  teneurin-2

      See identical proteins and their annotated locations for NP_064473.1

      Status: PROVISIONAL

      Source sequence(s)
      AF086607
      UniProtKB/TrEMBL
      A6HDJ4
      Related
      ENSRNOP00000109718.1, ENSRNOT00000171102.1
      Conserved Domains (11) summary
      COG3209
      Location:1680 → 2473
      RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
      cd00054
      Location:671 → 700
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd05819
      Location:1231 → 1270
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2382 → 2459
      Rhs_assc_core; RHS repeat-associated core domain
      pfam05593
      Location:1673 → 1711
      RHS_repeat; RHS Repeat
      pfam06484
      Location:10 → 374
      Ten_N; Teneurin Intracellular Region
      pfam07974
      Location:580 → 602
      EGF_2; EGF-like domain
      pfam15636
      Location:2683 → 2758
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      cl18310
      Location:1231 → 1561
      NHL; NHL repeat unit of beta-propeller proteins
      cl19567
      Location:755 → 796
      DSL; Delta serrate ligand
      cl21470
      Location:923 → 1007
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      20984710..22121001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039085070.2 → XP_038940998.1  teneurin-2 isoform X5

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      Related
      ENSRNOP00000108300.1, ENSRNOT00000146782.1
      Conserved Domains (8) summary
      COG3209
      Location:1885 → 2371
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1170 → 1209
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2321 → 2398
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1170 → 1500
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1612 → 1648
      RHS_repeat; RHS Repeat
      pfam06484
      Location:10 → 304
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2620 → 2697
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:500 → 815
      exchanger_TraA; outer membrane exchange protein TraA

    2. XM_063268320.1 → XP_063124390.1  teneurin-2 isoform X7

      Related
      ENSRNOP00000112023.1, ENSRNOT00000132901.1

    3. XM_039085069.2 → XP_038940997.1  teneurin-2 isoform X4

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      Conserved Domains (8) summary
      COG3209
      Location:1907 → 2393
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1199 → 1227
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2343 → 2420
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1199 → 1522
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1634 → 1670
      RHS_repeat; RHS Repeat
      pfam06484
      Location:10 → 374
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2642 → 2719
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:529 → 844
      exchanger_TraA; outer membrane exchange protein TraA

    4. XM_039085068.2 → XP_038940996.1  teneurin-2 isoform X3

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      Conserved Domains (8) summary
      COG3209
      Location:1914 → 2400
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1199 → 1238
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2350 → 2427
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1199 → 1529
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1641 → 1677
      RHS_repeat; RHS Repeat
      pfam06484
      Location:10 → 374
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2649 → 2726
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:529 → 844
      exchanger_TraA; outer membrane exchange protein TraA

    5. XM_039085071.2 → XP_038940999.1  teneurin-2 isoform X6

      UniProtKB/TrEMBL
      A0A8I5Y1H9, A6HDJ4
      Related
      ENSRNOP00000077386.1, ENSRNOT00000097791.2
      Conserved Domains (9) summary
      COG3209
      Location:1884 → 2370
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1169 → 1208
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2320 → 2397
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1169 → 1499
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1611 → 1647
      RHS_repeat; RHS Repeat
      pfam06484
      Location:10 → 374
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2619 → 2696
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033662
      Location:772 → 802
      acid_disulf_rpt; acidic double-disulfide repeat
      NF033759
      Location:570 → 808
      exchanger_TraA; outer membrane exchange protein TraA

    6. XM_039085066.2 → XP_038940994.1  teneurin-2 isoform X2

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      Related
      ENSRNOP00000099251.1, ENSRNOT00000173444.1
      Conserved Domains (8) summary
      COG3209
      Location:1948 → 2434
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1240 → 1268
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2384 → 2461
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1240 → 1563
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1675 → 1711
      RHS_repeat; RHS Repeat
      pfam06484
      Location:10 → 374
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2683 → 2760
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:570 → 885
      exchanger_TraA; outer membrane exchange protein TraA

    7. XM_039085063.2 → XP_038940991.1  teneurin-2 isoform X1

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      UniProtKB/TrEMBL
      A0A096P6L6
      Related
      ENSRNOP00000011922.8, ENSRNOT00000011922.10
      Conserved Domains (8) summary
      COG3209
      Location:1955 → 2441
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1240 → 1279
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2391 → 2468
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1240 → 1570
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1682 → 1718
      RHS_repeat; RHS Repeat
      pfam06484
      Location:10 → 374
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2690 → 2767
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:570 → 885
      exchanger_TraA; outer membrane exchange protein TraA

    8. XM_063268319.1 → XP_063124389.1  teneurin-2 isoform X1

      UniProtKB/TrEMBL
      A0A096P6L6

    9. XM_039085076.2 → XP_038941004.1  teneurin-2 isoform X12

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      Conserved Domains (8) summary
      COG3209
      Location:1733 → 2219
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1018 → 1057
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2169 → 2246
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1018 → 1348
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1460 → 1496
      RHS_repeat; RHS Repeat
      pfam06484
      Location:14 → 152
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2468 → 2545
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:348 → 663
      exchanger_TraA; outer membrane exchange protein TraA

    10. XM_063268321.1 → XP_063124391.1  teneurin-2 isoform X10

    11. XM_063268322.1 → XP_063124392.1  teneurin-2 isoform X13

    12. XM_039085072.2 → XP_038941000.1  teneurin-2 isoform X8

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      Conserved Domains (8) summary
      COG3209
      Location:1803 → 2289
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1088 → 1127
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2239 → 2316
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1088 → 1418
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1530 → 1566
      RHS_repeat; RHS Repeat
      pfam06484
      Location:10 → 222
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2538 → 2615
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:418 → 733
      exchanger_TraA; outer membrane exchange protein TraA

    13. XM_039085075.2 → XP_038941003.1  teneurin-2 isoform X11

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      Conserved Domains (8) summary
      COG3209
      Location:1758 → 2244
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1043 → 1082
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2194 → 2271
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1043 → 1373
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1485 → 1521
      RHS_repeat; RHS Repeat
      pfam06484
      Location:1 → 177
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2493 → 2570
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:373 → 688
      exchanger_TraA; outer membrane exchange protein TraA

    14. XM_039085074.2 → XP_038941002.1  teneurin-2 isoform X9

      UniProtKB/Swiss-Prot
      Q9R1J9, Q9R1K0, Q9R1K1, Q9R1K2
      Conserved Domains (8) summary
      COG3209
      Location:1793 → 2279
      RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
      cd05819
      Location:1078 → 1117
      NHL; NHL repeat [structural motif]
      TIGR03696
      Location:2229 → 2306
      Rhs_assc_core; RHS repeat-associated core domain
      cl18310
      Location:1078 → 1408
      NHL; NHL repeat unit of beta-propeller proteins
      pfam05593
      Location:1520 → 1556
      RHS_repeat; RHS Repeat
      pfam06484
      Location:4 → 212
      Ten_N; Teneurin Intracellular Region
      pfam15636
      Location:2528 → 2605
      Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
      NF033759
      Location:408 → 723
      exchanger_TraA; outer membrane exchange protein TraA
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9R1K2.2 GenPept UniProtKB/Swiss-Prot:Q9R1K2

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