U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ATU_RS23865 T-DNA border endonuclease VirD2 [ Agrobacterium fabrum str. C58 ]

    Gene ID: 1137505, updated on 27-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ATU_RS23865
    Gene description
    T-DNA border endonuclease VirD2
    Locus tag
    ATU_RS23865
    Gene type
    protein coding
    Organism
    Agrobacterium fabrum str. C58 (strain: C58, culture-collection: ATCC:33970, type-material: type strain of Agrobacterium fabrum)
    Lineage
    Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex
    Old locus tag
    AGR_pTi_21; Atu6182
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    plasmid: Ti
    Sequence:
    NC_003065.3 (196503..197846)

    NC_003065.3Genomic Context describing neighboring genes Neighboring gene conjugal transfer ATPase VirC1 Neighboring gene T-DNA border endonuclease subunit VirD1 Neighboring gene protein virD3 Neighboring gene type IV secretion system ATPase VirD4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003065.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Interaction of the Agrobacterium tumefaciens virulence protein VirD2 with histones. Wolterink-van Loo S, et al. Microbiology (Reading), 2015 Feb. PMID 25505187
    2. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Wood DW, et al. Science, 2001 Dec 14. PMID 11743193
    3. Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58. Goodner B, et al. Science, 2001 Dec 14. PMID 11743194

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. VirD2 was transferred from Agrobacterium to Saccharomyces cerevisiae and interacted with histone proteins.
      Title: Interaction of the Agrobacterium tumefaciens virulence protein VirD2 with histones.
    Submit: New GeneRIF Correction

    General protein information

    Go to the top of the page Help
    Preferred Names
    T-DNA border endonuclease VirD2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003065.3 Reference assembly

      Range
      196503..197846
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_010974919.1 MULTISPECIES: T-DNA border endonuclease VirD2 [Rhizobium/Agrobacterium group]

      See identical proteins and their annotated locations for WP_010974919.1

      UniProtKB/Swiss-Prot
      P06521, P06522, P18592
      UniProtKB/TrEMBL
      A0A2Z2PHU8, A0A2Z2PM90, A0A2Z2PPD1, A0A2Z2PUU1, A0A2Z2PXT6, A0AAF0HG74
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P18592.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.