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    thoc3 THO complex 3 [ Oryzias melastigma (Indian medaka) ]

    Gene ID: 112137824, updated on 10-Jul-2024

    Summary

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    Gene symbol
    thoc3
    Gene description
    THO complex 3
    See related
    EnsemblRapid:ENSOMEG00005011142
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias melastigma
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    human zebrafish all
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    Genomic context

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    See thoc3 in Genome Data Viewer
    Location:
    chromosome: LG10
    Exon count:
    6
    Annotation release Status Assembly LG Location
    101 current ASM292280v2 (GCF_002922805.2) LG10 NC_050521.1 (27918404..27920933, complement)
    100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096110.1 (1475225..1477395)

    Linkage Group LG10 - NC_050521.1Genomic Context describing neighboring genes Neighboring gene NLR family CARD domain-containing protein 3 Neighboring gene uncharacterized LOC112137827 Neighboring gene complexin-2 Neighboring gene shootin 3 Neighboring gene ganglioside GM2 activator Neighboring gene protocadherin 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of THO complex part of transcription export complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THO complex subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM292280v2 Primary Assembly

    Genomic

    1. NC_050521.1 Reference ASM292280v2 Primary Assembly

      Range
      27918404..27920933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024260331.2 → XP_024116099.1  THO complex subunit 3

      UniProtKB/TrEMBL
      A0A3B3DY12
      Related
      ENSOMEP00005024903.1, ENSOMET00005027580.1
      Conserved Domains (2) summary
      cd00200
      Location:12 → 261
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:30 → 68
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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