U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    parn poly(A)-specific ribonuclease (deadenylation nuclease) [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 108258427, updated on 20-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    parn
    Gene description
    poly(A)-specific ribonuclease (deadenylation nuclease)
    See related
    EnsemblRapid:ENSIPUG00020004373
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See parn in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 26 NC_030441.2 (20144637..20153021)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 26 NC_030441.1 (18631625..18639888)

    Chromosome 26 - NC_030441.2Genomic Context describing neighboring genes Neighboring gene putative leucine-rich repeat-containing protein DDB_G0290503 Neighboring gene zinc finger protein 883 Neighboring gene RNA exonuclease 5 Neighboring gene secretory phospholipase A2 receptor Neighboring gene ERI1 exoribonuclease family member 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    poly(A)-specific ribonuclease PARN

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030441.2 Reference Coco_2.0 Primary Assembly

      Range
      20144637..20153021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053676063.1 → XP_053532038.1  poly(A)-specific ribonuclease PARN isoform X1

      UniProtKB/TrEMBL
      W5U5L5
      Related
      ENSIPUP00020006904.1, ENSIPUT00020008801.1

    2. XM_053676064.1 → XP_053532039.1  poly(A)-specific ribonuclease PARN isoform X2

      UniProtKB/TrEMBL
      A0A9F7TGG0
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.