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    ODC1A ornithine decarboxylase [ Nicotiana tabacum (common tobacco) ]

    Gene ID: 107801491, updated on 28-Dec-2023

    Summary

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    Gene symbol
    ODC1A
    Gene description
    ornithine decarboxylase
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Nicotiana tabacum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
    Also known as
    ODC
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    Genomic context

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    See ODC1A in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015934162.1 (24305..25951, complement)

    NW_015934162.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015934162.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Effects of down-regulating ornithine decarboxylase upon putrescine-associated metabolism and growth in Nicotiana tabacum L. Dalton HL, et al. J Exp Bot, 2016 May. PMID 27126795, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ornithine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in putrescine biosynthetic process from ornithine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ornithine decarboxylase 1A, chloroplastic; ornithine decarboxylase
    XP_016480308.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001325697.1 → NP_001312626.1  ornithine decarboxylase 1A, chloroplastic

      Status: PROVISIONAL

      Source sequence(s)
      LC030209
      UniProtKB/Swiss-Prot
      A0A0M4URG0, A0A1S4AUX8, Q9SXF3
      UniProtKB/TrEMBL
      A0A9B4MAG6
      Conserved Domains (2) summary
      cd00622
      Location:63 → 424
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase
      COG0019
      Location:48 → 423
      LysA; Diaminopimelate decarboxylase [Amino acid transport and metabolism]

    RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ntab-TN90 Primary Assembly

    Genomic

    1. NW_015934162.1 Reference Ntab-TN90 Primary Assembly

      Range
      24305..25951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016624822.1 → XP_016480308.1  ornithine decarboxylase

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1S4AUX8.1 GenPept UniProtKB/Swiss-Prot:A0A1S4AUX8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases