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    LOC105027531 clustered mitochondria protein homolog [ Esox lucius (northern pike) ]

    Gene ID: 105027531, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC105027531
    Gene description
    clustered mitochondria protein homolog
    See related
    Ensembl:ENSELUG00000006399
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Esox lucius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
    Orthologs
    zebrafish all
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    Genomic context

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    See LOC105027531 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    104 current fEsoLuc1.pri (GCF_011004845.1) 7 NC_047575.1 (6138466..6174496, complement)
    103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG07 NC_025974.4 (44930399..44966782)

    Chromosome 7 - NC_047575.1Genomic Context describing neighboring genes Neighboring gene MAX network transcriptional repressor b Neighboring gene platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b Neighboring gene coiled-coil domain containing 92Bb Neighboring gene F-box only protein 40

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular distribution of mitochondria IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: clustered mitochondria protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEsoLuc1.pri Primary Assembly

    Genomic

    1. NC_047575.1 Reference fEsoLuc1.pri Primary Assembly

      Range
      6138466..6174496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029120677.2 → XP_028976510.2  LOW QUALITY PROTEIN: clustered mitochondria protein homolog

      UniProtKB/TrEMBL
      A0A3P8XLD9
      Related
      ENSELUP00000067182.2, ENSELUT00000084170.2
      Conserved Domains (7) summary
      PTZ00121
      Location:168 → 468
      PTZ00121; MAEBL; Provisional
      sd00006
      Location:1574 → 1602
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1614 → 1690
      TPR_12; Tetratricopeptide repeat
      pfam12807
      Location:1273 → 1460
      eIF3_p135; Translation initiation factor eIF3 subunit 135
      pfam13236
      Location:884 → 1104
      CLU; Clustered mitochondria
      pfam15044
      Location:598 → 667
      CLU_N; Mitochondrial function, CLU-N-term
      NF033930
      Location:358 → 563
      pneumo_PspA; pneumococcal surface protein A
    Nucleotide Protein
    Heading Accession and Version

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