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    tnfb tumor necrosis factor b (TNF superfamily, member 2) [ Larimichthys crocea (large yellow croaker) ]

    Gene ID: 104933337, updated on 12-Mar-2024

    Summary

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    Gene symbol
    tnfb
    Gene description
    tumor necrosis factor b (TNF superfamily, member 2)
    Locus tag
    EH28_05037
    See related
    Ensembl:ENSLCRG00005000649
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Larimichthys crocea
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
    Also known as
    TNFa
    Orthologs
    zebrafish all
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    Genomic context

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    Location:
    chromosome: XIII
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current L_crocea_2.0 (GCF_000972845.2) XIII NC_040023.1 (32966701..32968515, complement)
    101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609392.1 (170481..172295, complement)

    Chromosome XIII - NC_040023.1Genomic Context describing neighboring genes Neighboring gene SH3-binding domain protein 5-like, a Neighboring gene gamma-aminobutyric acid (GABA) B receptor, 1a Neighboring gene uncharacterized LOC113747229 Neighboring gene uncharacterized LOC109142236 Neighboring gene apolipoprotein M

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor b (TNF superfamily, member 2)
    Names
    tumor necrosis factor alpha 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001303385.1 → NP_001290314.1  tumor necrosis factor b (TNF superfamily, member 2)

      See identical proteins and their annotated locations for NP_001290314.1

      Status: PROVISIONAL

      Source sequence(s)
      EF070393
      UniProtKB/TrEMBL
      A0A6G0ICD7, A0T1H7
      Related
      ENSLCRP00005001330.1, ENSLCRT00005001371.1
      Conserved Domains (1) summary
      cd00184
      Location:96 → 250
      TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

    RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference L_crocea_2.0 Primary Assembly

    Genomic

    1. NC_040023.1 Reference L_crocea_2.0 Primary Assembly

      Range
      32966701..32968515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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