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    LOC103639134 superoxide dismutase [Cu-Zn] 4AP [ Zea mays ]

    Gene ID: 103639134, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC103639134
    Gene description
    superoxide dismutase [Cu-Zn] 4AP
    Locus tag
    ZEAMMB73_Zm00001d047479
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    sod9; Sod4A; SODCC.3; GRMZM2G058522
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    Genomic context

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    See LOC103639134 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (135072380..135076020, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (131494600..131498241, complement)

    Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene nascent polypeptide-associated complex alpha subunit-like protein Neighboring gene uncharacterized LOC100278002 Neighboring gene inactive beta-amylase 9 Neighboring gene uncharacterized LOC103639136 Neighboring gene uncharacterized LOC109942218 Neighboring gene uncharacterized LOC103639138

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comparison of the structure and function of the highly homologous maize antioxidant Cu/Zn superoxide dismutase genes, Sod4 and Sod4A. Kernodle SP, et al. Genetics, 1996 Sep. PMID 8878695, Free PMC Article
    2. Two cDNAs encode two nearly identical Cu/Zn superoxide dismutase proteins in maize. Cannon RE, et al. Mol Gen Genet, 1989 Oct. PMID 2482436
    3. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    4. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables superoxide dismutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in removal of superoxide radicals IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    superoxide dismutase [Cu-Zn] 4A
    Names
    CL1415_1
    IDP3812
    SodCc
    magi5472
    pMAGI_5472-1069
    pMAGI_5472-1081
    pMAGI_5472-1196
    pMAGI_5472-1385
    sod*-4A
    superoxide dismutase 2
    superoxide dismutase 9
    superoxide dismutase candidate4A
    superoxide dismutase-4A
    superoxide dismutase9
    umc1094
    NP_001307761.1
    XP_008660153.1
    XP_008660154.1
    XP_020399413.1
    XP_035818291.1
    XP_035818292.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320832.2 → NP_001307761.1  superoxide dismutase [Cu-Zn] 4A isoform 1

      Status: VALIDATED

      Source sequence(s)
      DN212362, DR825871, FL131796
      UniProtKB/Swiss-Prot
      P23345, P23346
      UniProtKB/TrEMBL
      B6SK54, C4J9A9, P93801
      Conserved Domains (1) summary
      PLN02386
      Location:1 → 152
      PLN02386; superoxide dismutase [Cu-Zn]

    2. NM_001416252.1 → NP_001403181.1  superoxide dismutase [Cu-Zn] 4A isoform 1

      Status: VALIDATED

      Source sequence(s)
      DN212362, FL131796
      UniProtKB/Swiss-Prot
      P23346
      UniProtKB/TrEMBL
      B6SK54

    3. NM_001416253.1 → NP_001403182.1  superoxide dismutase [Cu-Zn] 4A isoform 1

      Status: VALIDATED

      Source sequence(s)
      DN212362, FK998838
      UniProtKB/Swiss-Prot
      P23346
      UniProtKB/TrEMBL
      B6SK54

    4. NM_001416254.1 → NP_001403183.1  superoxide dismutase [Cu-Zn] 4A isoform 2

      Status: VALIDATED

      Source sequence(s)
      DN207355, DN212362, FL131796
      UniProtKB/TrEMBL
      B6TIS2

    5. NM_001416255.1 → NP_001403184.1  superoxide dismutase [Cu-Zn] 4A isoform 2

      Status: VALIDATED

      Source sequence(s)
      DN207355, DN212362, FK998838
      UniProtKB/TrEMBL
      B6TIS2

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      135072380..135076020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008661932.4 → XP_008660154.1  superoxide dismutase [Cu-Zn] 4A isoform X2

      UniProtKB/TrEMBL
      B6TIS2
      Conserved Domains (1) summary
      cl00891
      Location:1 → 118
      Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

    2. XM_035962398.1 → XP_035818291.1  superoxide dismutase [Cu-Zn] 4A isoform X2

      UniProtKB/TrEMBL
      A0A3L6DJH4, B6TIS2
      Conserved Domains (1) summary
      cl00891
      Location:1 → 118
      Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

    3. XM_035962399.1 → XP_035818292.1  superoxide dismutase [Cu-Zn] 4A isoform X2

      Conserved Domains (1) summary
      cl00891
      Location:1 → 118
      Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

    4. XM_020543824.3 → XP_020399413.1  superoxide dismutase [Cu-Zn] 4A isoform X1

      Conserved Domains (1) summary
      PLN02386
      Location:1 → 152
      PLN02386; superoxide dismutase [Cu-Zn]

    5. XM_008661931.4 → XP_008660153.1  superoxide dismutase [Cu-Zn] 4A isoform X1

      UniProtKB/Swiss-Prot
      P23346
      UniProtKB/TrEMBL
      B6SK54
      Conserved Domains (1) summary
      PLN02386
      Location:1 → 152
      PLN02386; superoxide dismutase [Cu-Zn]

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001111953.1: Suppressed sequence

      Description
      NM_001111953.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P23345.2 GenPept UniProtKB/Swiss-Prot:P23345

    Gene LinkOut

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    Research Materials