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    Supt6h SPT6 homolog, histone chaperone and transcription elongation factor [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101712658, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Supt6h
    Gene description
    SPT6 homolog, histone chaperone and transcription elongation factor
    See related
    Ensembl:ENSHGLG00000018764
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Supt6h in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624786.1 (1226131..1271872)

    NW_004624786.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase related Neighboring gene bridge-like lipid transfer protein family member 2 Neighboring gene stromal cell derived factor 2 Neighboring gene protein interacting with cyclin A1 Neighboring gene uncharacterized LOC110344396 Neighboring gene RAB34, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624786 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor SPT6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624786.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      1226131..1271872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021238320.1 → XP_021093979.1  transcription elongation factor SPT6

      UniProtKB/TrEMBL
      A0A0P6K3C6, G5BVI0
      Related
      ENSHGLP00000026368.1, ENSHGLT00000026603.1
      Conserved Domains (2) summary
      pfam14633
      Location:1304 → 1514
      SH2_2; SH2 domain
      cl28255
      Location:372 → 1353
      Pnp; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]

    2. XM_004857002.3 → XP_004857059.1  transcription elongation factor SPT6

      UniProtKB/TrEMBL
      A0A0P6K3C6, G5BVI0
      Related
      ENSHGLP00000026367.1, ENSHGLT00000026602.1
      Conserved Domains (2) summary
      pfam14633
      Location:1304 → 1514
      SH2_2; SH2 domain
      cl28255
      Location:372 → 1353
      Pnp; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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