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    pks1 polyketide synthase 1 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101169887, updated on 8-Mar-2024

    Summary

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    Gene symbol
    pks1
    Gene description
    polyketide synthase 1
    See related
    EnsemblRapid:ENSORLG00000012793
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Also known as
    olpks
    Orthologs
    zebrafish all
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    Genomic context

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    See pks1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 20 NC_019878.2 (22977439..22986925, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 20 NC_019878.1 (21703897..21713383, complement)

    Chromosome 20 - NC_019878.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110017259 Neighboring gene retinol dehydrogenase 12, like Neighboring gene equisetin synthetase eqxS Neighboring gene YME1 like 1 ATPase Neighboring gene microtubule associated serine/threonine kinase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-oxoacyl-[acyl-carrier-protein] synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fatty acid synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyketide synthase 1; probable polyketide synthase 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001309031.1 → NP_001295960.1  polyketide synthase 1

      See identical proteins and their annotated locations for NP_001295960.1

      Status: PROVISIONAL

      Source sequence(s)
      AB923905
      UniProtKB/TrEMBL
      A0A0K2QIW8, H2MBT8
      Related
      ENSORLP00000016015.2, ENSORLT00000016016.3
      Conserved Domains (7) summary
      smart00822
      Location:1709 → 1887
      PKS_KR; This enzymatic domain is part of bacterial polyketide synthases
      smart00827
      Location:521 → 821
      PKS_AT; Acyl transferase domain in polyketide synthase (PKS) enzymes
      COG3321
      Location:2 → 1062
      PksD; Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism]
      cd00833
      Location:3 → 423
      PKS; polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or ...
      pfam00550
      Location:1980 → 2047
      PP-binding; Phosphopantetheine attachment site
      cl00509
      Location:886 → 1150
      hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...
      cl16912
      Location:1451 → 1491
      MDR; Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019878.2 Reference ASM223467v1 Primary Assembly

      Range
      22977439..22986925 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020712381.1 → XP_020568040.1  probable polyketide synthase 16 isoform X1

      UniProtKB/TrEMBL
      H2MBT8
      Conserved Domains (4) summary
      smart00822
      Location:1730 → 1908
      PKS_KR; This enzymatic domain is part of bacterial polyketide synthases
      COG3321
      Location:2 → 1083
      PksD; Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism]
      pfam00550
      Location:2001 → 2068
      PP-binding; Phosphopantetheine attachment site
      cl16912
      Location:1447 → 1499
      MDR; Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family
    Nucleotide Protein
    Heading Accession and Version

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