U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CRY1 cryptochrome circadian regulator 1 [ Felis catus (domestic cat) ]

    Gene ID: 101089451, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CRY1
    Official Full Name
    cryptochrome circadian regulator 1
    Primary source
    VGNC:VGNC:61195
    See related
    EnsemblRapid:ENSFCTG00005026365
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Felis catus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CRY1 in Genome Data Viewer
    Location:
    chromosome: B4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) B4 NC_058374.1 (126543848..126637356, complement)
    104 previous assembly Felis_catus_9.0 (GCF_000181335.3) B4 NC_018729.3 (128854477..128948080, complement)

    Chromosome B4 - NC_058374.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene transmembrane protein 263 Neighboring gene 5S ribosomal RNA Neighboring gene mitochondrial transcription termination factor 2 Neighboring gene uncharacterized LOC109501989 Neighboring gene U6 spliceosomal RNA Neighboring gene ankyrin repeat and BTB domain containing 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in circadian regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in entrainment of circadian clock by photoperiod IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cryptochrome-1
    Names
    cryptochrome 1 (photolyase-like)
    cryptochrome circadian clock 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference F.catus_Fca126_mat1.0 Primary Assembly

    Genomic

    1. NC_058374.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

      Range
      126543848..126637356 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003989209.6 → XP_003989258.1  cryptochrome-1 isoform X1

      See identical proteins and their annotated locations for XP_003989258.1

      UniProtKB/TrEMBL
      M3XE84
      Related
      ENSFCTP00005052603.1, ENSFCTT00005074669.1
      Conserved Domains (2) summary
      COG0415
      Location:6 → 491
      PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
      pfam03441
      Location:288 → 486
      FAD_binding_7; FAD binding domain of DNA photolyase

    2. XM_045062270.1 → XP_044918205.1  cryptochrome-1 isoform X1

      UniProtKB/TrEMBL
      M3XE84
      Related
      ENSFCTP00005052726.1, ENSFCTT00005074893.1
      Conserved Domains (2) summary
      COG0415
      Location:6 → 491
      PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
      pfam03441
      Location:288 → 486
      FAD_binding_7; FAD binding domain of DNA photolyase

    3. XM_019835452.2 → XP_019691011.1  cryptochrome-1 isoform X2

      Related
      ENSFCTP00005052657.1, ENSFCTT00005074774.1
      Conserved Domains (2) summary
      cl30787
      Location:33 → 472
      PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
      pfam03441
      Location:269 → 467
      FAD_binding_7; FAD binding domain of DNA photolyase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.