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    HOXB-AS4 HOXB cluster antisense RNA 4 [ Homo sapiens (human) ]

    Gene ID: 100874351, updated on 12-Sep-2024

    Summary

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    Official Symbol
    HOXB-AS4provided by HGNC
    Official Full Name
    HOXB cluster antisense RNA 4provided by HGNC
    Primary source
    HGNC:HGNC:40285
    See related
    Ensembl:ENSG00000242207 AllianceGenome:HGNC:40285
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See HOXB-AS4 in Genome Data Viewer
    Location:
    17q21.32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (48628698..48634932)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (49492294..49498528)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (46706060..46712294)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46688892-46689712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:46694872-46695395 Neighboring gene homeobox B8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46702573-46703250 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:46704661-46704816 Neighboring gene homeobox B9 Neighboring gene microRNA 196a-1 Neighboring gene long intergenic non-protein coding RNA 3057 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46718588-46719586 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46719587-46720583 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46723751-46724419 Neighboring gene long intergenic non-protein coding RNA 2086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12339 Neighboring gene ribosomal protein L9 pseudogene 28 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:46790297-46790470 Neighboring gene cytochrome c oxidase subunit 6B1 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • HOXB cluster antisense RNA 4 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046611.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC103702
      Related
      ENST00000480386.1

    2. NR_170224.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC103702

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      48628698..48634932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      49492294..49498528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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