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    utp11 UTP11 small subunit processome component [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100696019, updated on 8-Mar-2024

    Summary

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    Gene symbol
    utp11
    Gene description
    UTP11 small subunit processome component
    See related
    Ensembl:ENSONIG00000033069
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Biased expression in ovary (RPKM 127.2), testis (RPKM 27.8) and 2 other tissues See more
    Orthologs
    human zebrafish all
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    Genomic context

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    See utp11 in Genome Data Viewer
    Location:
    chromosome: LG11
    Exon count:
    8
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG11 NC_031976.2 (27168118..27171277)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG11 NC_031976.1 (12567761..12570918, complement)

    Linkage Group LG11 - NC_031976.2Genomic Context describing neighboring genes Neighboring gene R-spondin 1 Neighboring gene four and a half LIM domains 3a Neighboring gene POU class 3 homeobox 1 Neighboring gene uncharacterized LOC102078505 Neighboring gene uncharacterized LOC102078438

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable U3 small nucleolar RNA-associated protein 11
    Names
    UTP11, small subunit processome component homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031976.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      27168118..27171277
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003450519.4 → XP_003450567.1  probable U3 small nucleolar RNA-associated protein 11

      UniProtKB/TrEMBL
      A0A669EBP6
      Related
      ENSONIP00000068974.1, ENSONIT00000040464.1
      Conserved Domains (1) summary
      pfam03998
      Location:12 → 254
      Utp11; Utp11 protein
    Nucleotide Protein
    Heading Accession and Version

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