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    RAD54L2 RAD54 like 2 [ Sus scrofa (pig) ]

    Gene ID: 100520639, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RAD54L2provided by VGNC
    Official Full Name
    RAD54 like 2provided by VGNC
    Primary source
    VGNC:VGNC:92061
    See related
    Ensembl:ENSSSCG00000011425
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 4.5), lung (RPKM 4.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See RAD54L2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (33771783..33890567)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (37107800..37124258, complement)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 1 Neighboring gene transcription initiation factor TFIID subunit 10 pseudogene Neighboring gene uncharacterized LOC110256236 Neighboring gene fatty acid-binding protein, heart pseudogene Neighboring gene testis expressed 264, ER-phagy receptor Neighboring gene glutamate metabotropic receptor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    helicase ARIP4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      33771783..33890567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021068851.1 → XP_020924510.1  helicase ARIP4 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SFE2, A0A8D0JIC4
      Related
      ENSSSCP00000012177.4, ENSSSCT00000012505.5
      Conserved Domains (2) summary
      COG0553
      Location:135 → 908
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cl26464
      Location:1107 → 1460
      Atrophin-1; Atrophin-1 family

    2. XM_021068850.1 → XP_020924509.1  helicase ARIP4 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SFE2, A0A8D0JIC4
      Conserved Domains (2) summary
      COG0553
      Location:135 → 908
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cl26464
      Location:1107 → 1460
      Atrophin-1; Atrophin-1 family

    3. XM_021068853.1 → XP_020924512.1  helicase ARIP4 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SFE2, A0A8D0JIC4
      Conserved Domains (2) summary
      COG0553
      Location:135 → 908
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cl26464
      Location:1107 → 1460
      Atrophin-1; Atrophin-1 family

    4. XM_021068854.1 → XP_020924513.1  helicase ARIP4 isoform X2

      Conserved Domains (2) summary
      COG0553
      Location:49 → 498
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cl26464
      Location:697 → 1050
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

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