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    sec16b SEC16 homolog B, endoplasmic reticulum export factor [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100488357, updated on 17-Aug-2024

    Summary

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    Official Symbol
    sec16bprovided by Xenbase
    Official Full Name
    SEC16 homolog B, endoplasmic reticulum export factorprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-6468128
    See related
    Ensembl:ENSXETG00000040736
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    rgpr; lztr2; sec16s
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (99313933..99403039, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (89103308..89187985, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene astrotactin 1 Neighboring gene BMP/retinoic acid inducible neural specific 2 Neighboring gene zinc finger BED domain-containing protein 5 Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within COPII vesicle coating IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein transport protein Sec16B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      99313933..99403039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031900967.1 → XP_031756827.1  protein transport protein Sec16B isoform X2

      UniProtKB/TrEMBL
      A0A8J1JG24
      Conserved Domains (1) summary
      cd09233
      Location:293 → 646
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

    2. XM_031900966.1 → XP_031756826.1  protein transport protein Sec16B isoform X1

      UniProtKB/TrEMBL
      A0A6I8QG69
      Related
      ENSXETP00000068622.2, ENSXETT00000082667.2
      Conserved Domains (1) summary
      cd09233
      Location:293 → 646
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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