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    NEFH neurofilament heavy chain [ Sus scrofa (pig) ]

    Gene ID: 100156492, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NEFHprovided by VGNC
    Official Full Name
    neurofilament heavy chainprovided by VGNC
    Primary source
    VGNC:VGNC:90669
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    NF-H
    Expression
    Biased expression in mixtures (RPKM 1.3), lung (RPKM 0.4) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See NEFH in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (46559698..46568686)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (49572997..49583859)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene RAS like family 10 member A Neighboring gene adaptor related protein complex 1 subunit beta 1 Neighboring gene uncharacterized LOC106505960 Neighboring gene uncharacterized LOC106505961 Neighboring gene THO complex subunit 5 Neighboring gene nipsnap homolog 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Specific recognition of coiled coils by infrared spectroscopy: analysis of the three structural domains of type III intermediate filament proteins. Heimburg T, et al. Biochemistry, 1996 Feb 6. PMID 8634266
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of postsynaptic intermediate filament cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neurofilament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: neurofilament heavy polypeptide
    Names
    200 kDa neurofilament protein
    Neurofilament triplet H protein
    neurofilament heavy polypeptide

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      46559698..46568686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005670778.3 → XP_005670835.2  LOW QUALITY PROTEIN: neurofilament heavy polypeptide

      Conserved Domains (2) summary
      pfam00038
      Location:92 → 407
      Filament; Intermediate filament protein
      cl26511
      Location:493 → 1056
      Neuromodulin_N; Gap junction protein N-terminal region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P12037.1 GenPept UniProtKB/Swiss-Prot:P12037

    Gene LinkOut

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