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    LOC100153854 pancreatic alpha-amylase [ Sus scrofa (pig) ]

    Gene ID: 100153854, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC100153854
    Gene description
    pancreatic alpha-amylase
    See related
    Ensembl:ENSSSCG00000039921
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in longissimus dorsi muscle (RPKM 27.9), ovary (RPKM 27.8) and 7 other tissues See more
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    Genomic context

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    See LOC100153854 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) Unplaced Scaffold NW_018085083.1 (45515..59481, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (126526449..126544430, complement)

    NW_018085083.1Genomic Context describing neighboring genes Neighboring gene pancreatic alpha-amylase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-amylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: pancreatic alpha-amylase
    Names
    alpha-amylase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NW_018085083.1 Reference Sscrofa11.1 Primary Assembly

      Range
      45515..59481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005663628.3 → XP_005663685.2  LOW QUALITY PROTEIN: pancreatic alpha-amylase

      UniProtKB/TrEMBL
      A0A480N2X2, A0A4X1TTV4
      Related
      ENSSSCP00000007309.4, ENSSSCT00000007508.5
      Conserved Domains (2) summary
      cd11317
      Location:25 → 416
      AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
      smart00632
      Location:422 → 510
      Aamy_C; Aamy_C domain
    Nucleotide Protein
    Heading Accession and Version

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