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    LOC100136065 vitellogenin receptor [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 100136065, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100136065
    Gene description
    vitellogenin receptor
    See related
    Ensembl:ENSOMYG00000022122
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (18025589..18062043)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (14478838..14516271)

    Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110539122 Neighboring gene SH3 domain-binding protein 2 Neighboring gene potassium voltage-gated channel subfamily V member 2-like Neighboring gene pumilio homolog 3 Neighboring gene uncharacterized LOC118937635

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of oogenesis: the receptor for vitellogenin from the rainbow trout. Davail B, et al. J Lipid Res, 1998 Oct. PMID 9788239

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vitellogenin receptor
    Names
    vtg receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001124375.1 → NP_001117847.1  vitellogenin receptor precursor

      See identical proteins and their annotated locations for NP_001117847.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ417877
      UniProtKB/TrEMBL
      A0A8C7RQK8, Q90W12
      Related
      ENSOMYP00000054256.2, ENSOMYT00000059063.2
      Conserved Domains (10) summary
      smart00192
      Location:66 → 98
      LDLa; Low-density lipoprotein receptor domain class A
      smart00135
      Location:502 → 543
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:391 → 425
      EGF_CA; Calcium-binding EGF-like domain
      cd00112
      Location:28 → 62
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cd05819
      Location:466 → 508
      NHL; NHL repeat [structural motif]
      pfam00057
      Location:233 → 268
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:564 → 604
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:355 → 389
      FXa_inhibition; Coagulation Factor Xa inhibitory site
      cl00104
      Location:106 → 144
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cl18310
      Location:466 → 570
      NHL; NHL repeat unit of beta-propeller proteins

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      18025589..18062043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036936672.1 → XP_036792567.1  vitellogenin receptor isoform X4

      UniProtKB/TrEMBL
      A0A8C7RQK8, A0A8C7RQR5
      Related
      ENSOMYP00000054542.2, ENSOMYT00000059384.2
      Conserved Domains (9) summary
      smart00192
      Location:66 → 98
      LDLa; Low-density lipoprotein receptor domain class A
      smart00135
      Location:502 → 543
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:391 → 425
      EGF_CA; Calcium-binding EGF-like domain
      cd00112
      Location:28 → 62
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cd05819
      Location:466 → 508
      NHL; NHL repeat [structural motif]
      cl18310
      Location:466 → 570
      NHL; NHL repeat unit of beta-propeller proteins
      pfam00057
      Location:233 → 268
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:564 → 604
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:355 → 389
      FXa_inhibition; Coagulation Factor Xa inhibitory site

    2. XM_021622401.2 → XP_021478076.2  vitellogenin receptor isoform X2

      UniProtKB/TrEMBL
      A0A8C7RQK8
      Conserved Domains (9) summary
      smart00192
      Location:66 → 98
      LDLa; Low-density lipoprotein receptor domain class A
      smart00135
      Location:461 → 502
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:350 → 384
      EGF_CA; Calcium-binding EGF-like domain
      cd00112
      Location:28 → 62
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cd05819
      Location:425 → 467
      NHL; NHL repeat [structural motif]
      cl18310
      Location:425 → 529
      NHL; NHL repeat unit of beta-propeller proteins
      pfam00057
      Location:233 → 268
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:523 → 563
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:314 → 348
      FXa_inhibition; Coagulation Factor Xa inhibitory site

    3. XM_021622400.2 → XP_021478075.2  vitellogenin receptor isoform X1

      UniProtKB/TrEMBL
      A0A8C7RQK8
      Conserved Domains (9) summary
      smart00192
      Location:66 → 98
      LDLa; Low-density lipoprotein receptor domain class A
      smart00135
      Location:502 → 543
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:391 → 425
      EGF_CA; Calcium-binding EGF-like domain
      cd00112
      Location:28 → 62
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cd05819
      Location:466 → 508
      NHL; NHL repeat [structural motif]
      cl18310
      Location:466 → 570
      NHL; NHL repeat unit of beta-propeller proteins
      pfam00057
      Location:233 → 268
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:564 → 604
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:355 → 389
      FXa_inhibition; Coagulation Factor Xa inhibitory site

    4. XM_021622402.2 → XP_021478077.1  vitellogenin receptor isoform X3

      UniProtKB/TrEMBL
      A0A8K9V802
      Related
      ENSOMYP00000120203.1, ENSOMYT00000136521.1
      Conserved Domains (8) summary
      smart00135
      Location:361 → 402
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:250 → 284
      EGF_CA; Calcium-binding EGF-like domain
      cd00112
      Location:8 → 42
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cd05819
      Location:325 → 367
      NHL; NHL repeat [structural motif]
      pfam00057
      Location:92 → 127
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:423 → 463
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      cl18310
      Location:325 → 429
      NHL; NHL repeat unit of beta-propeller proteins
      pfam14670
      Location:214 → 248
      FXa_inhibition; Coagulation Factor Xa inhibitory site
    Nucleotide Protein
    Heading Accession and Version

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