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    syt17 synaptotagmin 17 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100125097, updated on 17-Aug-2024

    Summary

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    Official Symbol
    syt17provided by Xenbase
    Official Full Name
    synaptotagmin 17provided by Xenbase
    Primary source
    Xenbase:XB-GENE-949409
    See related
    Ensembl:ENSXETG00000032441
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (32677870..32731949, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (26795217..26847382, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene SMG1 phosphatidylinositol 3-kinase-related kinase Neighboring gene C-type lectin domain family 19 member A Neighboring gene ITPRIP like 2 Neighboring gene palmitoleoyl-protein carboxylesterase notum2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables SNARE binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium-dependent phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables clathrin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphatidylserine binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium-ion regulated exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in exocytic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    synaptotagmin-17
    Names
    synaptotagmin XVII
    sytXVII

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103008.1 → NP_001096478.1  synaptotagmin-17

      See identical proteins and their annotated locations for NP_001096478.1

      Status: PROVISIONAL

      Source sequence(s)
      BC136225
      UniProtKB/Swiss-Prot
      A4IJ05
      UniProtKB/TrEMBL
      A0A803K8C0
      Related
      ENSXETP00000061793.1, ENSXETT00000066337.3
      Conserved Domains (2) summary
      cd08390
      Location:186 → 314
      C2A_Synaptotagmin-15-17; C2A domain first repeat present in Synaptotagmins 15 and 17
      cd08410
      Location:323 → 457
      C2B_Synaptotagmin-17; C2 domain second repeat present in Synaptotagmin 17

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      32677870..32731949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031892464.1 → XP_031748324.1  synaptotagmin-17 isoform X1

      UniProtKB/TrEMBL
      A0A6I8R7Z5, A0A803JSY5
      Related
      ENSXETP00000111114.1, ENSXETT00000106971.1
      Conserved Domains (2) summary
      cd08390
      Location:183 → 311
      C2A_Synaptotagmin-15-17; C2A domain first repeat present in Synaptotagmins 15 and 17
      cd08410
      Location:320 → 454
      C2B_Synaptotagmin-17; C2 domain second repeat present in Synaptotagmin 17
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4IJ05.1 GenPept UniProtKB/Swiss-Prot:A4IJ05

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.