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    SEMA4F ssemaphorin 4F [ Equus caballus (horse) ]

    Gene ID: 100068980, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SEMA4Fprovided by VGNC
    Official Full Name
    ssemaphorin 4Fprovided by VGNC
    Primary source
    VGNC:VGNC:22817
    See related
    Ensembl:ENSECAG00000010510
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA4F in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 15 NC_009158.3 (29385524..29411024, complement)

    Chromosome 15 - NC_009158.3Genomic Context describing neighboring genes Neighboring gene DNA polymerase epsilon 4, accessory subunit Neighboring gene hexokinase 2 Neighboring gene meiosis 1 associated protein Neighboring gene uncharacterized LOC111768058 Neighboring gene docking protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009158.3 Chromosome 15 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-4F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009158.3 Reference EquCab3.0 Primary Assembly

      Range
      29385524..29411024 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023618830.1 → XP_023474598.1  semaphorin-4F isoform X4

      UniProtKB/TrEMBL
      A0A3Q2LG81
      Related
      ENSECAP00000039845.1, ENSECAT00000055189.3
      Conserved Domains (3) summary
      pfam01437
      Location:357 → 408
      PSI; Plexin repeat
      cl11960
      Location:415 → 494
      Ig; Immunoglobulin domain
      cl15693
      Location:52 → 356
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    2. XM_005599879.3 → XP_005599936.2  semaphorin-4F isoform X2

      UniProtKB/TrEMBL
      F6PUR8
      Related
      ENSECAP00000008622.2, ENSECAT00000011078.4
      Conserved Domains (3) summary
      cd11261
      Location:52 → 478
      Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
      pfam01437
      Location:479 → 530
      PSI; Plexin repeat
      cl11960
      Location:537 → 616
      Ig; Immunoglobulin domain

    3. XM_001916547.5 → XP_001916582.2  semaphorin-4F isoform X1

      Conserved Domains (3) summary
      cd11261
      Location:52 → 511
      Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
      pfam01437
      Location:512 → 563
      PSI; Plexin repeat
      cl11960
      Location:570 → 649
      Ig; Immunoglobulin domain

    4. XM_005599880.3 → XP_005599937.2  semaphorin-4F isoform X3

      Conserved Domains (3) summary
      pfam01437
      Location:377 → 428
      PSI; Plexin repeat
      cl11960
      Location:435 → 514
      Ig; Immunoglobulin domain
      cl15693
      Location:34 → 376
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    Nucleotide Protein
    Heading Accession and Version

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