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    SOSTDC1 sclerostin domain containing 1 [ Equus caballus (horse) ]

    Gene ID: 100052877, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SOSTDC1provided by VGNC
    Official Full Name
    sclerostin domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:23456
    See related
    Ensembl:ENSECAG00000012109
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SOSTDC1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 4 NC_009147.3 (49138379..49143644, complement)

    Chromosome 4 - NC_009147.3Genomic Context describing neighboring genes Neighboring gene mesenchyme homeobox 2 Neighboring gene CDP-L-ribitol pyrophosphorylase A Neighboring gene uncharacterized LOC111773182 Neighboring gene leucine rich repeat containing 72 Neighboring gene ankyrin repeat and MYND domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009147.3 Chromosome 4 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables BMP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sclerostin domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009147.3 Reference EquCab3.0 Primary Assembly

      Range
      49138379..49143644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001495777.6 → XP_001495827.1  sclerostin domain-containing protein 1

      See identical proteins and their annotated locations for XP_001495827.1

      UniProtKB/TrEMBL
      A0A9L0SPW0, F6T7A1
      Related
      ENSECAP00000076982.1, ENSECAT00000125805.1
      Conserved Domains (1) summary
      pfam05463
      Location:6 → 206
      Sclerostin; Sclerostin (SOST)
    Nucleotide Protein
    Heading Accession and Version

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