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    Rbmyf9 RNA binding motif protein Y-linked family member 9 [ Mus musculus (house mouse) ]

    Gene ID: 100041505, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Rbmyf9provided by MGI
    Official Full Name
    RNA binding motif protein Y-linked family member 9provided by MGI
    Primary source
    MGI:MGI:3781554
    See related
    Ensembl:ENSMUSG00000096520 AllianceGenome:MGI:3781554
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm3376; Rbmy1b
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in male gonad development and positive regulation of mRNA splicing, via spliceosome. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBMY1B (RNA binding motif protein Y-linked family 1 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 1.6) See more
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    Genomic context

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    See Rbmyf9 in Genome Data Viewer
    Location:
    Ypter; Y
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (3771673..3783271)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (3771673..3783271)

    Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene ras homolog A translocated to the Y, pseudogene 2 Neighboring gene predicted gene 2316 Neighboring gene predicted gene 28649 Neighboring gene ras homolog gene family, member A pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Meiotic sex chromosome inactivation in male mice with targeted disruptions of Xist. Turner JM, et al. J Cell Sci, 2002 Nov 1. PMID 12356914
    2. An RBM homologue maps to the mouse Y chromosome and is expressed in germ cells. Elliott DJ, et al. Hum Mol Genet, 1996 Jul. PMID 8817321
    3. Does Rbmy have a role in sperm development in mice? Szot M, et al. Cytogenet Genome Res, 2003. PMID 15051956
    4. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in male gonad development ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in positive regulation of mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding motif protein, Y chromosome, family 9
    Names
    RNA binding motif protein, Y chromosome, family 1 member
    RNA-binding motif protein 1
    rNA-binding motif protein, Y chromosome, family 1 member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001270512.1 → NP_001257441.1  RNA-binding motif protein, Y chromosome, family 9

      See identical proteins and their annotated locations for NP_001257441.1

      Status: INFERRED

      Source sequence(s)
      AC163691
      Consensus CDS
      CCDS85842.1
      UniProtKB/Swiss-Prot
      E9Q2F9, Q60990
      Related
      ENSMUSP00000141183.2, ENSMUST00000186140.7
      Conserved Domains (2) summary
      COG0724
      Location:3 → 85
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:7 → 86
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000087.8 Reference GRCm39 C57BL/6J

      Range
      3771673..3783271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q60990.3 GenPept UniProtKB/Swiss-Prot:Q60990

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