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    LOC100422263 serine palmitoyltransferase long chain base subunit 2 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100422263, updated on 27-Aug-2024

    Summary

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    Gene symbol
    LOC100422263
    Gene description
    serine palmitoyltransferase long chain base subunit 2 pseudogene
    See related
    Ensembl:ENSG00000213065
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    6q27
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (167767083..167768585, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (169105265..169106767, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (168167763..168169265, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901465 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168085935-168086436 Neighboring gene long intergenic non-protein coding RNA 2487 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168103963-168104504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168108302-168109023 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168109024-168109744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168113086-168113654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168113655-168114223 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168123500-168124015 Neighboring gene uncharacterized LOC107986547 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168167604-168168104 Neighboring gene long intergenic non-protein coding RNA 1558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168199638-168200171 Neighboring gene uncharacterized LOC441179 Neighboring gene Sharpr-MPRA regulatory region 935 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17792 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25460 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25461 Neighboring gene AFDN divergent transcript Neighboring gene afadin, adherens junction formation factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_025891.1 

      Range
      101..1603
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      167767083..167768585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      169105265..169106767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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