U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC100420641 TNF receptor associated factor 7 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100420641, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC100420641
    Gene description
    TNF receptor associated factor 7 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC100420641 in Genome Data Viewer
    Location:
    16p12.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (25825400..25826332, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (26101830..26102762, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (25836721..25837653, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371147 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:25564716-25565915 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:25580065-25581264 Neighboring gene NANOG hESC enhancer GRCh37_chr16:25586609-25587370 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:25644366-25645565 Neighboring gene uncharacterized LOC105369297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:25704024-25704524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:25704525-25705025 Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 4 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:25855925-25856182 Neighboring gene Sharpr-MPRA regulatory region 8309 Neighboring gene NANOG hESC enhancer GRCh37_chr16:25896223-25896797 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:25899968-25901167 Neighboring gene NANOG hESC enhancer GRCh37_chr16:25959776-25960299 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:25961820-25962673 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:25962674-25963526 Neighboring gene RNA, 5S ribosomal pseudogene 405 Neighboring gene microRNA 548w

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_026354.1 

      Range
      101..1033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      25825400..25826332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      26101830..26102762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)