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    CLPTM1LP1 CLPTM1L pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 106480241, updated on 17-Sep-2024

    Summary

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    Official Symbol
    CLPTM1LP1provided by HGNC
    Official Full Name
    CLPTM1L pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:49023
    See related
    Ensembl:ENSG00000271036 AllianceGenome:HGNC:49023
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See CLPTM1LP1 in Genome Data Viewer
    Location:
    1q31.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (189035961..189036444, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (188381606..188382089, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (189005092..189005575, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene endogenous retrovirus group FRD member 1, envelope pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:188675571-188676770 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:188720473-188721405 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:188726483-188727113 Neighboring gene RPS3A pseudogene 9 Neighboring gene Sharpr-MPRA regulatory region 5628 Neighboring gene MPRA-validated peak536 silencer Neighboring gene MPRA-validated peak538 silencer Neighboring gene long intergenic non-protein coding RNA 1035 Neighboring gene uncharacterized LOC105371657 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 75 Neighboring gene MPRA-validated peak539 silencer Neighboring gene MPRA-validated peak540 silencer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_043819.1 

      Range
      101..584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      189035961..189036444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      188381606..188382089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases