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    LOC100288365 activating transcription factor 7 interacting protein 2 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100288365, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC100288365
    Gene description
    activating transcription factor 7 interacting protein 2 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    11p15.4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (11135471..11136740)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (11220371..11221641)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (11157018..11158287)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902629 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:10920769-10921968 Neighboring gene uncharacterized LOC107984309 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:10929292-10929928 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:10929929-10930563 Neighboring gene Sharpr-MPRA regulatory region 6670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3155 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3156 Neighboring gene uncharacterized LOC105379882 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:10958208-10958396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11058390-11058890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11058891-11059391 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:11086765-11087366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11089215-11089716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11089717-11090216 Neighboring gene OCT4 hESC enhancer GRCh37_chr11:11093610-11094115 Neighboring gene OCT4 hESC enhancer GRCh37_chr11:11117645-11118146 Neighboring gene long intergenic non-protein coding RNA 2752 Neighboring gene uncharacterized LOC105376548 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021808.2 

      Range
      101..1370
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      11135471..11136740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      11220371..11221641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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