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    HMGB1P37 high mobility group box 1 pseudogene 37 [ Homo sapiens (human) ]

    Gene ID: 100132863, updated on 17-Sep-2024

    Summary

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    Official Symbol
    HMGB1P37provided by HGNC
    Official Full Name
    high mobility group box 1 pseudogene 37provided by HGNC
    Primary source
    HGNC:HGNC:39184
    See related
    AllianceGenome:HGNC:39184
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See HMGB1P37 in Genome Data Viewer
    Location:
    9q33.2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (121519652..121520391, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (133715686..133716425, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (124281931..124282670, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723324 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:124132533-124133493 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:124148517-124149463 Neighboring gene stomatin Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:124215525-124216026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:124216027-124216526 Neighboring gene NANOG hESC enhancer GRCh37_chr9:124234601-124235163 Neighboring gene glycoprotein alpha-galactosyltransferase 1 (inactive) Neighboring gene Sharpr-MPRA regulatory region 3911 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20236 Neighboring gene RNA, 7SL, cytoplasmic 187, pseudogene Neighboring gene uncharacterized LOC107987016 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20237 Neighboring gene Sharpr-MPRA regulatory region 14365 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:124359845-124360812 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:124360813-124361778 Neighboring gene DAB2 interacting protein Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:124366827-124367614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:124393797-124394545 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:124396647-124397309 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:124411655-124412490 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:124416949-124417448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:124446578-124447078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28925 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:124468887-124469686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:124480397-124480994 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:124482472-124482999 Neighboring gene uncharacterized LOC105376257

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • SP100 nuclear antigen pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021636.2 

      Range
      101..840
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      121519652..121520391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      133715686..133716425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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