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    SP3P Sp3 transcription factor pseudogene [ Homo sapiens (human) ]

    Gene ID: 160824, updated on 17-Sep-2024

    Summary

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    Official Symbol
    SP3Pprovided by HGNC
    Official Full Name
    Sp3 transcription factor pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:35430
    See related
    AllianceGenome:HGNC:35430
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See SP3P in Genome Data Viewer
    Location:
    13q31.2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (89359753..89363283, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (88563847..88567377, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (90012007..90015537, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1047 Neighboring gene NANOG hESC enhancer GRCh37_chr13:89895215-89895716 Neighboring gene long intergenic non-protein coding RNA 440 Neighboring gene tripartite motif containing 60 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:89976834-89977393 Neighboring gene NANOG hESC enhancer GRCh37_chr13:90016648-90017149 Neighboring gene NANOG hESC enhancer GRCh37_chr13:90032206-90032789 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:90053092-90054291 Neighboring gene uncharacterized LOC107984621 Neighboring gene NANOG hESC enhancer GRCh37_chr13:90058380-90058922 Neighboring gene long intergenic non-protein coding RNA 1040

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Human transcription factor Sp3: genomic structure, identification of a processed pseudogene, and transcript analysis. Moran KM, et al. Gene, 2004 Oct 27. PMID 15474306
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_004748.5 

      Range
      101..3631
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      89359753..89363283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      88563847..88567377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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